RNA id: TU261457


Basic Information

Item Value
RNA id TU261457
length 842
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G192530
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8857991 ~ 8904877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccccccccacacacacacacacactcacacacacacacacacgactttTAATAATTAGTAGAACAACACAATTACTTTCTAAAAAGTGCTAAAACCTACATGACATGTTGTGAGAACGACTAAATCATGATGTCCATTTATGAAGTGTCCCCTGAGTAGAAGTAGGCTGATCTGTTGCTAATGTATCGTGTGGTTGTACAATCATGTTATCATTTCTATTTATTACAGTGTAACCAGCAGAGTTTTGTGTGGTAACGTCATACCTACTGTATTGGTAACGTACTTTATATGAAGGCATCTTGAAAagttgagttgtttttttttatgatgataGTAACTGAggtcaaatatttaaatattgtaCTTCCCTGTGTAACACAAGGAAGTGTGTGAAACCAGTATTGGGATCAaagattcttttctttttatcgcAAAACCAGGTTAACCATCATTTTGACTCGTGTGTTTTCCGGGATGTACCAAACCGGAGGATCACCAGGGTGTTGGCTGTTGTGACTTTGATTTTCTGGAAGTTGGCTGTTTTGATCGGCTGTTTTTTCAGACGATCAAACAACTTTCTAGCAGATTGCCACAGAGAGCTgctccatttaaaaaacaaaacaaaaaacaaaaaacaggagCTCTTCCCTGAAATATCCTGAGATGACCCTGATTTTGTGTCTCATTGAGACTGTGCACTGGACCAGTGTTTAGATGAAGACAGTACATTCTACCGTTATGTTAGACCtctccaaatgttttttttttttttctcctcctcatgCTTTTGTAAAAACAGCTACTTTGTAAACCAATAAACTTCTCATCTTGGAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261368 lncRNA upstream 480292 8369378 ~ 8377699 (+) True G192464
TU261307 lncRNA upstream 728628 8126718 ~ 8129363 (+) True LOC120548141
XR_005637145.1 lncRNA upstream 728630 8126999 ~ 8129361 (+) False LOC120548141
TU261312 lncRNA upstream 731998 8124918 ~ 8125993 (+) True G192413
TU261305 lncRNA upstream 756838 8075930 ~ 8101153 (+) True bean1
XR_005637142.1 lncRNA downstream 72327 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA downstream 72327 8977204 ~ 9058418 (+) False LOC120548135
XR_005637144.1 lncRNA downstream 72327 8977204 ~ 9058418 (+) False LOC120548135
TU261508 lncRNA downstream 285141 9190018 ~ 9195416 (+) False meis1b
TU261618 lncRNA downstream 492671 9397548 ~ 9419324 (+) True G192633
XM_039783416.1 mRNA upstream 62399 8750738 ~ 8795592 (+) False ugp2b
XM_039783415.1 mRNA upstream 62399 8751425 ~ 8795592 (+) True ugp2b
XM_039783417.1 mRNA upstream 109081 8743007 ~ 8748910 (+) True mdh1ab
XM_039783409.1 mRNA upstream 204819 8645881 ~ 8653172 (+) True otx1
XM_039783401.1 mRNA upstream 216204 8481426 ~ 8641787 (+) True ehbp1
XM_039783725.1 mRNA downstream 4788 8909665 ~ 8912332 (+) True LOC120547906
XM_039784353.1 mRNA downstream 12548 8917425 ~ 8927490 (+) False aftphb
XM_039784351.1 mRNA downstream 12550 8917427 ~ 8927489 (+) True aftphb
XM_039784352.1 mRNA downstream 12551 8917428 ~ 8927489 (+) False aftphb
XM_039784166.1 mRNA downstream 25670 8930547 ~ 8948105 (+) True LOC120548133
unassigned_transcript_1115 other upstream 906803 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2053439 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2352172 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2356896 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 2497000 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 701648 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 1410069 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 1536650 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1681901 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1681945 10586822 ~ 10591159 (+) False mrpl57

Expression Profile