RNA id: TU261618


Basic Information

Item Value
RNA id TU261618
length 777
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G192633
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9397548 ~ 9419324 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaaaaaaaaaagttttattaaGTCTGACACATGCACATGTGTAAAAGCACCTCAAAACAACATGATTCATAGAATCACTTTTAAAATACAGAGAAATTCTCATTTATCTGAAAGAAGGAACCAAACATTCCTAAATGACATATTTCAATACCTGTATGAACCAAGATTTTACTCACTTttcttaataaaaataatacttTTTCAAGGTTATGGCATCCTGAAGAAGATTTACAACTTAATGGTGAAGTAACATTACAAAAGTATTACAGACTCGAGTCTTAAATTCTAGAGCAACAATACGCTCAGCAAAACCTGGGATGGTATATCGTAGATGGCCATCCGTCTTGTGTTTTGGTTAATCCAGCAACATGAATGCTGCAATCTGACAGGCTATTTGACTGGTGAGCAACTCAGATAAACACCAACGTGTATTTTGTTGTATGTGTCATGTTGCCTTGTTTGATGCCAGTATCGCAACTTAAGAAGCTGCCTTGTGAACAAAAAGTGTTTGTTATTCCCAAAGAGGTACAAATGCAGTGGGACCAGACCGTACAGCTCCTTCTCTCCTTCAGCTCTGCTTTGGACGCTTTGACTGCGGGGTGTCAGACTTTGTGTCTGCTGCTTTCTTGGATGCTGCTTTTTTTCTAGAATCTTTTTCGTCTGTATTGTACAGAGCATTCCTGACAAAGCGTGCAGCAGCCCCCTTATCCAGACGGGCAGCTTTCTTCCTGTCTGTAATCTCTTTCACTTTGTTCATGTACGTCCTTATTCGCTC

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261508 lncRNA upstream 202132 9190018 ~ 9195416 (+) False meis1b
XR_005637142.1 lncRNA upstream 339130 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA upstream 339130 8977204 ~ 9058418 (+) False LOC120548135
XR_005637144.1 lncRNA upstream 339130 8977204 ~ 9058418 (+) False LOC120548135
TU261457 lncRNA upstream 492671 8857991 ~ 8904877 (+) True G192530
TU261676 lncRNA downstream 68439 9487763 ~ 9491128 (+) True G192667
TU261680 lncRNA downstream 77733 9497057 ~ 9497414 (+) False kcnq5a
TU261708 lncRNA downstream 215441 9634765 ~ 9638011 (+) True G192691
TU261710 lncRNA downstream 219057 9638381 ~ 9640978 (+) True G192692
TU261703 lncRNA downstream 253087 9672411 ~ 9673252 (+) False arhgef33
XM_039784595.1 mRNA upstream 63550 9327374 ~ 9333998 (+) True LOC120548362
XM_039784170.1 mRNA upstream 203156 9114656 ~ 9194392 (+) True meis1b
XM_039784166.1 mRNA upstream 449443 8930547 ~ 8948105 (+) True LOC120548133
XM_039784353.1 mRNA upstream 470058 8917425 ~ 8927490 (+) False aftphb
XM_039784351.1 mRNA upstream 470059 8917427 ~ 8927489 (+) True aftphb
XM_039783259.1 mRNA downstream 2020 9421344 ~ 9437910 (+) True LOC120547702
XM_039783260.1 mRNA downstream 2775 9422099 ~ 9437910 (+) False LOC120547702
XM_039783262.1 mRNA downstream 23552 9442876 ~ 9447476 (+) True pno1
XM_039784387.1 mRNA downstream 77467 9496791 ~ 9602882 (+) True kcnq5a
XM_039783029.1 mRNA downstream 187201 9606525 ~ 9624120 (+) True ddx43
unassigned_transcript_1115 other upstream 1446360 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2592996 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2891729 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2896453 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 3036557 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 187201 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 895622 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 1022203 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1167454 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1167498 10586822 ~ 10591159 (+) False mrpl57

Expression Profile