RNA id: TU261676


Basic Information

Item Value
RNA id TU261676
length 2018
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G192667
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9487763 ~ 9491128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAACTATATTGCGCCATTTCATTGTTTCTTTGTTGCTCTGATTTCTTACATAGATCAATtcaatatttaaaagaaaatatttattttaatatttaatttatttatagtttctTTCTACCAatatacacacaataataaaagggTTTAAAGGTTCACTGTACAAAAATACTATTTCTAAAAATATAAGTTACCACTAGCAATAGAAAATGGCTACAATGGCTTCATGGCTATGTCCTTCGGAAGAGGTAGAGAAAACAAGCACACTGTAAATAGGGGCACAACTCCACCCAAATACAAAATTCCTACATCCAATACTGCATTATactgtacaaaaaataaaaaatacacaaaaagaatacacatacacacagctacacagagATTTTCATTctaaaacactcaaaatgtcaTGGTTTAGAGGTGCTGACGCAGAGGAGGTGCACTGCAGTGTCATTGTAAAAGGATAAGGGCTGAAGCAGGCTTTTGACAAGATAGacatattcttcttcttctcttcttgcTGGGTAACAGTAGCTCGTAGATACTCCCAGAGGAGCTGACCTGTACACTTTCAAGAGCTGAAAGATTTCATCAAATTACCAGGGTAACGTTTTGTGGGCAACTGCATTACCTTGTAACTCTTTCAGACAAACAACGACCTAGTCCATCTTGCCTAAGGACTGGGTGGCAGCCCAGTGCACCACTACGTCTCAAGCCAGTCAAGTTTGACTTTAAATGGGTTTGGAGGTGGCAGCAACAACATCAGCAGGACTATTCGGTTAAAAAGAAGTGGTATCTCTCCAGTTATACGGATTTGGTTCGGTTTTGTGAGGATCAGCTTCAAGGTGAAAGTCTTTCACAACTAAAAGTAGCAGCACAATAGGTTGAGAGTAGTAGAGTGGTAGAGTTGGTTTCCTTGTACTGTACACGTTACTGCTTTTTAAAGCAGCTGATGGAAAATgcctgtaataataataataaagtaaattcccttattttatttcatttttaactaTGTGGGCGCTTTTCTTTGGCCATATTGCCTTGCTCTTTGAAAAATACTGTATACCCCACATTTTTAACATTAGAAGCTGCAGATGTCGTGGAAAGCTCAAATACACGTACATAAAGGGAAAATTCTGCTCGGGGCcaatgaaattaaaatgtcaCTAACGCAAGGGCACTTGACTTGGTTGAACTTAGTAATTTCTGGAAATCTTGGAAAGTCATTTTGGAATGAAACATGTAGAAATATCTtcaaaaaacataaacacatctgtaaaacacatactgtagctaaacacacaggcacatgtGCATTCACACATAtggtactgtacatacacataaGCTTAAACACACTTGAGGTTTACCACATGCCACGGCACAgtacattacaaatatttatttcaaaacGTCATTTAATCTGCATTATATAATTAAAACTGTAGGTTGTCGAGAAATGCTACATGTTTCTTTTTAATCTCaataatgtataaataaatgtacCAAATGTATAACcaccataaacaaacaaaaccagtGTAAAAAGACTTCActgcattttaaatgttctgccataGGATCTGATTTGGCAGTAAATCCGATCACTATTTTACGGCAGAAAAGGgttgcattttcttttcaaacagagaaaaaaaacctttagATTTTCCAATAATGGAAAGATTGAAAGACTACAATAAAGCCAAACAGTAAGGTAGAGTGTGTATCTATTGTAGATTCACAGTTTACATGCTTCCTTTTAGCAACAGGAAGCAATACACTAATAGAAACATCAGTACACACTGAATATTTCCAGATGTTCCTCCATCAGACAAACATCTCCTTGTTGACCCACATGAGTGTGCGCGTGTCGTTGGGTTTGCACTCGTACTCGATGCTGTTGAAGCTGTTTCCCCACTGGCAGTGGTCCCTtttgttgtagttgtagtaCTTCACCTGCCACACCGTTTCAAACATCCCGGCCTCTGTGAACTGTATGTTGATTTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261620 lncRNA upstream 37942 9404402 ~ 9449821 (+) True G192634
TU261618 lncRNA upstream 68439 9397548 ~ 9419324 (+) True G192633
TU261508 lncRNA upstream 292347 9190018 ~ 9195416 (+) False meis1b
XR_005637142.1 lncRNA upstream 429345 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA upstream 429345 8977204 ~ 9058418 (+) False LOC120548135
TU261680 lncRNA downstream 5929 9497057 ~ 9497414 (+) False kcnq5a
TU261708 lncRNA downstream 143637 9634765 ~ 9638011 (+) True G192691
TU261710 lncRNA downstream 147253 9638381 ~ 9640978 (+) True G192692
TU261703 lncRNA downstream 181283 9672411 ~ 9673252 (+) False arhgef33
TU261733 lncRNA downstream 187608 9678736 ~ 9680975 (+) True G192713
XM_039783262.1 mRNA upstream 40287 9442876 ~ 9447476 (+) True pno1
XM_039783259.1 mRNA upstream 49853 9421344 ~ 9437910 (+) True LOC120547702
XM_039783260.1 mRNA upstream 49853 9422099 ~ 9437910 (+) False LOC120547702
XM_039784595.1 mRNA upstream 153765 9327374 ~ 9333998 (+) True LOC120548362
XM_039784170.1 mRNA upstream 293371 9114656 ~ 9194392 (+) True meis1b
XM_039784387.1 mRNA downstream 5663 9496791 ~ 9602882 (+) True kcnq5a
XM_039783029.1 mRNA downstream 115397 9606525 ~ 9624120 (+) True ddx43
XM_039784526.1 mRNA downstream 162776 9653904 ~ 9673252 (+) False arhgef33
XM_039784524.1 mRNA downstream 162777 9653905 ~ 9673252 (+) True arhgef33
XM_039784523.1 mRNA downstream 162777 9653905 ~ 9673252 (+) False arhgef33
unassigned_transcript_1115 other upstream 1536575 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2683211 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2981944 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2986668 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 3126772 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 115397 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 823818 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 950399 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1095650 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1095694 10586822 ~ 10591159 (+) False mrpl57

Expression Profile