RNA id: XM_039784387.1


Basic Information

Item Value
RNA id XM_039784387.1
length 4830
RNA type mRNA
GC content 0.51
exon number 18
gene id kcnq5a
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9496791 ~ 9602882 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATAGAAAATCATAGCAACTTAGATGTCGAGAACACCTACTAACGCAGTGGTTCTGGTACTGCTGGCTGTGCTGCGCGCTTCGCTGTCCGATAAGTAAAAGAGAAGCATGGTTTGGGCAGCACCGGCAGGCTCCACACACTTTGACAGAAAGAAGCAAGACGGCGAGTGAGAGTTGGGGAATAAACGGGAGGTTGGGAGAGCCCTCCCCCTGCCAAATGTCTCGATGGATCCACTCCTTCATAACCCCACTCTTCTCCAGCCTTGCGCAGATGGCCAACGTGTCCAAACAGGACTGTGAATATGCTCACACGGCCACGGGATGACAAGATGAGAGCAGATTAGAAATCGAACTCTTCTCCCactgctttgttttatttagtgTCTAGGGAAAGCCAAAGTAGTCAAACACCCTGCGCAAGAGCACTTGGCTCCATATGAATGTCTGTCGGTCTCCCAGCGCACAGCGCTGGTGATGCCATGCCGCGAAGTCACACCGGCGATGAGAGCAGCGGCACTGGGCTCTGGCTGAAGACCCCAACAGGACACCGGGCGCAGGACTACGCACTGAAAGATGTGGAGTCTGGGCAGAGGACGATGAATAACGCGGTGCGGGTCGGGGCCGGGGCGGGGCCCCCGgcgggcgggggggggggggggaaaaaaagggggggggcccccccccccgggggggggggggggccgctGATCTACAGCGCGCAGAGCGGCCGCAGGAACGCGCGGTACCGGCGGTTCCAGAACTACCTGTACAACGTGTTGGAGAGACCGAGGGAATGGGCTTTCATCTACCACGCTTTTGTGTTCATCCTGGTGTTTGGATGTCTGGTTCTCTCTGTGTTTTCCACCATCCCTGCTCACCAGGATGTCTCCACACACTGCCTGCTCATCCtgGAGTTTGTGATGATTGTAGTGTTTGGTCTGGAGTACATCATCAGGATATGGAGTgctggctgctgctgccgctaCCGAGGCTGGCAAGGACGCCTCCGATTCGCCAGGAAGCCGTTCTGTGTTATAGACATCATCGTACTCATCGCCTCTGTTGCCGTGGTTTCAGCCGGTAGCCAGGGTAACATTTTTGCTACCTCTGCTCTGCGTAGCCTTCGTTTCCTGCAGATCCTGCGCATGGTGCGCATGGACCGCAGGGGAGGGACCTGGAAGTTGCTGGGATCTGTAGTTTATGCACATAGTAAGgAGCTGGTGACTGCCTGGTACATTGGGTTTCTGGTGCTaatcttctcctccttcttggTTTATCTGGTGGAGAAAGAACTCAACCAGGAGTTCGCCACCTACGCTGACGCTCTGTGGTGGGGCACGATCACCCTTACAACCATTGGCTACGGTGACAAGACCCCGCAGACGTGGACCGGACGGTTATTATCAGCTGGTTTTGCTCTGCTGGGGATCTCCTTCTTCGCTCTTCCAGCTGGCATCCTCGGGTCAGGTTTTGCCCTGAAAGTGCAGGAGCAGCATCGACAGAAGCACTTTGAAAAGAGGAGGAACCCAGCTGCCAGCCTCATTcagTGTGTCTGGCGTAGTTATGCTGCTGATGAGAACTCGGTTTCCATTGCTACCTGGAAGCCTCATTTGAAGGCGTTGCATACCTGCAGCCCCGCCAAGAAAGAGCAAGGAGAGACTACTTGCAGTCAGAAGTTGAGTTTTAAGGAGCGGGTCCGGATGGCGAGTCCCCGTGGTCAGAGCATGAAGAGCAGGCAGACGTCCATCAGCGACCGCCAACGCTCTTCCCCTGGCAACGAGGTGGTGGGCGGCGCAGATCTGATGGGTGGCAGCCCTGCCAAAGTGCAGAAGAGCTGGAGCTTCAATGATCGGACCCGGTTTAGGCCGTCACTGAGGCTGAAGAGCCAGACTCGCACTGCTGTCCCAGATGtggACACAGGCATGACCACAGAGGATTCCTTTGATGAGAGAGGCTGCCATTGCGACGTTACAGTGGAAGATCTATCGGCTCCCCTCAAGGCTGTCATCAGAGCTGTCAGgatcaTGAAGTTCCACGTTGCAAAAAAGAAGTTTAAGGAGACGTTGCGTCCGTACGATGTGAAGGATGTCATAGAGCAGTACTCTGCAGGACACTTGGACATGCTCTGTCGCATCAAGAGCCTTCAGACTAGACTAGACACTGTAGTGGGTCCCCCTCCAAAGCCTTTCAGCAGCCGCGTCAAGACCTTATCCTCTCCCTCCCTGCATTTATATTACAGCCAGGCCCGGAGGAAACAGTCTGCACCGGGACTGGCCAGTGCAGCGGGCTCTGGTCCCAGCCTGAGTAGCCGACCAAGGAACATGTCTTCTCCTGCCCTGCACTATTATTACAGCAACCACAGGAAGAAGCTCCCTGGCTCAGGGGTGGATCAGATTCTGGGAAAAGGCCATATTCCTGTGGATAAGAAGATGAGGGACAAACTGCACCCAGATGGAGACTCTCTAGAGAGCATGAGCATGCTGGGACGTGTGTGTAAGGTAGAGAGACAGGTAACTTCCATTGAATCAAAATTGGACTCTTTGCTGGACGTTTACCGCCAAGTCCTACACAAAGGCCCCACAGCACTCACCCTCTCCTCCCTTCCCCTGTTCGAGCTGGACAACCACCAGCATCGCAACTCTGACTACCAGACCTCCATCGTTGGCAGGGATCTACCCTCCCCCCAGAGAGGCGATCCGGCTGGAGGTGGAAGAAATAACAGTGGGGGCATACGTCGTTCTCTTAGCGTCAACCCTAGAGGCCTGCGGCTCATCCTGGCACCCGCTGATGATGACGGCCCCCCAGACTCAGAACCTCCATCCTATCCTCCGTCAACAGCCTCGCTCTCCCCATCACCCCTGCTGCCTCGATATCCAACCTTGCTCACCCCCAACGGTAACTCCAAAAGAGCACACTTTCCTGACCTCCCACCGCCACCTCCCTCAACAGGGGGTTTTACCCTCCGTCTGCCCCCCATGATGCATCCCTCCCACCTCCGATACTCCGCTGACCCCGTCCCAGATGAAATGACAGATGGAGTGCCGGTGGATGAGGGGAGCCTGGGCCCCTCTTTTGTTGTTGGATCCAGTGTCGATGCTGATGAGGAAGGGGACAGCGAGGCAGGCCCTACCCAGGGAAGGGTGCCGCTGCGGGAGAAGACTGGCTTGAAATCTGAGGGGGTTTGGAGGAGGCACATGAGCCTGGAGCTTGAtcccctgctgctgctctcgtcTAGCCCGGAAGAGAAGCCTTCAGACTGGGAAGGCAGTCTTGGAAAATCCCTCTCTGTGAACAATCTCAACCAGCCTTCGACCAACCATGCCCCTGGTCTCGCCTCCGTgctcaacaacagcagcagcagcaatggTAGCAAACGTGGCAATGCCTACGGTGACCTTAGAAACTGGGATGGAACAGAACTCTTCATTAGGGAGTGCAAACTAGAGCCAACAGAAGAACATTTCAACTTACTGTCCCAGGGACCTGACAGCATCCCCTCAGACCTTTTACAGACTGTGGAGGAGGCTGCACCTCACCCCGAGTTTCTCAGTCAGTCCCCACCACACGTACAGCTGGcataactacacacacacacacacataaacacactctctctcacccacacacacacacacacacaaacacacacacacacacttgcatactGTAAGTACAAACCATTGTTGGGGAAGCcacttttaaagtatttttacaCTCTACATATATTGTGTTGGAAATGTCCAATCAATGTTTTCTATATGGACATACAAGGTTTCACATTTTGTCTAACATGATTATATCCACTCATTCATTAtgttaaatactttttatagggtattacaattacttttattaagaataaaagtataaaatatgTATGAAAGTGGGCATATTTACATtagacaaaatacacaaacaatacacaaatACAAGATACCTTCATTTAAGAGAATTTGCTTTGGTCTTTATTTAAAGATATTTAGAGATTCATTTATTAACTTTTTACAAGATCATATATTAATAAAAAGGTTGCTAAAACaaaaattttgtttcaaataaaGAGCAAGAAAGGGATGTTACCTGTGATTTCTGAGCCTAGACTAGACATCGAAGTGTAGAAGCACATCAAATAATTTGGTTCACCACAAAAATATACTGTGAGTAATGTTAACTTTCTTTTCAATGTCATTTCCAGCAGTCTTACATTTTAACTTCTGTCTGATCCTAAACACAAACCAAAGTAGTTTGGGCACATCACTGAAACAAGCAGGAGTGTTTGTTGTAGAAATCGAAGGACATCTGCCTTGTGGCAACCTTGACAATTGAATGATTGAATCAAATCAGAAGGAAATACTGCATGATTGTCTCACAGCCAAAAATAGGTGCAAGTTAGTGTAGTTAAACCTCAAACAAGCCACTGGAAGCTATAGGTCAACCACTTCttccgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaggcaggcaggcagacagacacatccACAACCAGAGTACTCCAGCCAACTTGAAAAAGAGCTGTGACTCACAAATTACTGTCGAATGGTTTAGTTTTTCATACAATACTTTTCATTCAAATACTTTCTTGGAAGAAGAGGAGATCCAATCACTCTCCTTATTCAATGTCTGTCTTTGGCAATGTAAAATGTCATCATTTTACGAATGCTTTCATACATATCACTGCATGGACTGTATCCGAAAACAAATGAATGAAAGGAGAATTACAGTCTGTGTGAAGCCTGGTATGATGGGAATAGCTcaattcccaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04930 KCNQ5, KV7.5; potassium voltage-gated channel KQT-like subfamily member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261676 lncRNA upstream 5663 9487763 ~ 9491128 (+) True G192667
TU261620 lncRNA upstream 46970 9404402 ~ 9449821 (+) True G192634
TU261618 lncRNA upstream 77467 9397548 ~ 9419324 (+) True G192633
TU261508 lncRNA upstream 301375 9190018 ~ 9195416 (+) False meis1b
XR_005637142.1 lncRNA upstream 438373 8977204 ~ 9058418 (+) True LOC120548135
TU261708 lncRNA downstream 31883 9634765 ~ 9638011 (+) True G192691
TU261710 lncRNA downstream 35499 9638381 ~ 9640978 (+) True G192692
TU261703 lncRNA downstream 69529 9672411 ~ 9673252 (+) False arhgef33
TU261733 lncRNA downstream 75854 9678736 ~ 9680975 (+) True G192713
TU261771 lncRNA downstream 164379 9767261 ~ 9772128 (+) True G192733
XM_039783262.1 mRNA upstream 49315 9442876 ~ 9447476 (+) True pno1
XM_039783259.1 mRNA upstream 58881 9421344 ~ 9437910 (+) True LOC120547702
XM_039783260.1 mRNA upstream 58881 9422099 ~ 9437910 (+) False LOC120547702
XM_039784595.1 mRNA upstream 162793 9327374 ~ 9333998 (+) True LOC120548362
XM_039784170.1 mRNA upstream 302399 9114656 ~ 9194392 (+) True meis1b
XM_039783029.1 mRNA downstream 3643 9606525 ~ 9624120 (+) True ddx43
XM_039784526.1 mRNA downstream 51022 9653904 ~ 9673252 (+) False arhgef33
XM_039784524.1 mRNA downstream 51023 9653905 ~ 9673252 (+) True arhgef33
XM_039784523.1 mRNA downstream 51023 9653905 ~ 9673252 (+) False arhgef33
XM_039784525.1 mRNA downstream 51023 9653905 ~ 9673252 (+) False arhgef33
unassigned_transcript_1115 other upstream 1545603 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2692239 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2990972 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2995696 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 3135800 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 3643 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 712064 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 838645 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 983896 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 983940 10586822 ~ 10591159 (+) False mrpl57

Expression Profile