RNA id: XM_039784523.1


Basic Information

Item Value
RNA id XM_039784523.1
length 6200
RNA type mRNA
GC content 0.43
exon number 18
gene id arhgef33
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9653904 ~ 9673252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCAGGCTGAGACCTACATAGCAAAAAGGAGGAGCAGGCAAGTTTTTACAACTCCTTTCTCCTTTATCTAAAATTTAGAGGCAGCATAATCTGTTGAGCCACGGATTCTGTATACTTACTACAGAAGACGTTCCTGAATCCTGTGTAGAAAAGGGGCGTGGAGTAACAATTCTTTACAGGATGATCATGCTATTTAAACCTGTGTAAGTTAAGTTATGAATCAAGGCATATTTCACAGATAAAGGCAACTTGTGACCCTCTGTAAAATGAtgacacaatatacacacaacatTAGGCTGTAATAAATGTTaaaaaggaagaggaaaaggatTATAGATGGTTAGAATAACATAAAAGAATTGTACAACAATAATAGATAGGTTTAATAACTGTTTTGAATGTTTAGGCCGCGAGGACATCATCATTTTCTCTAAACCCCATTTCAATTATTGGTAAATCAGAAaagttttgttgtgtgtttttgtacagagacAAAATGGACAGTACATTCCCCTTGCACATACTCATATGTAACCAGAGAATCAGATGATGGTAATGATGTAACCTTCAAACACAGGTTGCTTGTTGAAATGAAGAGCAGCTCAGCTGTTTGTCTCCAGGGTTTAATTTCTCCAATGCAGAAAGACAGAGGAAACAAAGAGACATGCTGGAGATATGAAGCGAGAGAGACCGACTGACAGGAGCAGACAGATACTAGGCTTCCAGCACAGTGAGcagctgtTTTGATAAACTCACTTCATGCTGCCTGCTCAGCACCGAACCGCAGACAAGCACGGTAAGCAACTAGCTAGTGAACGTTGTGGAACATTTAACTGCTAAAGAGCCAGAATATTTTTCTCAGGAATTGGTGGAGAGCAAagagagctaaaagagagtgagtattggacttacattaatCAAGTCGCCGTAAACACAACACCAAATGGTGATGTTGCTTTGTGTGTGCTAGATGTGGAAATAGGCAACTGCTACTAATATGTTCGCCACACTAACATTATAAGGTGATGAGTGTTGAGATTACAGCTCGTATCATTGTCCCCACATGGCCAAGAAACACTCACTGTGTATGTTTGGTCATGGTGGCTCTGCCTGCCTGTGATCTCACATATACAAATATGTTACAGCTTGAGCAAGTCAAATAAATCAATCTGGTAAagtaagagaaaaaaataaacatgttatAAGACACATGAAGTTCACTTGTCGTAGTGATATATCTAACAACACACTTCCACAGCAGGGGAGTGCAATCAAGCTAGTTTCACTTTTACCCACTGCAATAACTGTATTTTCCATTTCAAGTTTATTCTGATTAGTGCTGCTGTGTAAACCATCCATACAACCAGTCATGCCTCCTTAAATTGAATGAGTTAGCGACAGTGTGTGGCTGTCAGATGaacaatttctctctctctcgctctctctctctcccctcctgaTCTTTCCCTTCTATCGCTCTATACTCTCTAAAGACAAGGGCCTTTTTGTGTGAAAGGGAAATCATAGGACTCACATGCTTTGGAAGAGAGAAAGTGAGTGATCACAGCAAAGAGATAGGGTTGTTCAGAAGAGAAGAACAATTTAGAGGAGCGGACTGAAGTCATCTTGAGCTGGATAAAGACTTCAGAACCGGACAGCTGTGAGCTAGACTGGACCACACCGGACAGGATACGTAAACATGGAGAATggcaaaacagaaacagaagacCAGACGGAAGGTGTGTCAGAAGttAAAGAAGAAAATGTGGAGGAAGCTAACATAGAAATTGCTCAGCTGCAGGGCTTGGTGGCTGAACTGCGCGAGGGGCTCCATGCTGCTTTGACGGAGCTGTGCGAGCTGCGTCAGAGGGACCACGGCCTGGAGGAGAAGCTCCAGGCCTATCAGACTGACGTGGATGATAAGATCATGGGCCTCAAGAACTTGCTAAACACTTTCAAGGATGAGCTCAATGTGGCACTGCTCCACATAAAGGATGTGTCGAGCAGACAGAGGGAGGTGCAGAAGAGGATAGAACTGTTTCAGTCGGAAAACACCAGAGATATCATCTCTGTTCCACAAAGCCAGCCAGACCTCAGTGTTATTCAACACTTCTTTTCCAGTCTGCCAAATAGCAGCTCACCACAGAGGAGCACCACATCCACACAGAcctCTACCTCTGAACAGGAggctcagcagcagcagagaggttGTCCAGCGTGGGGAGAGAGGAAGAACAGCAGAGACGACACAGAGACCGCCAACAGCCAAACTGAAAACAgtaaaAGACAGAGAGTCGCTCTCGAGTTGCTGGAGTCAGAGAGAATTTACGTGTCCCACCTGTCTCTGTTACTGAAGGCTAACATCTCCTTTAATGGATCAGAAGCTCTCACCTCCAAAGACAAACGTCCGTTTCCCAGCACTCTGAGGTTTCTGATCCAGCAGCACCTTGAGCTCCTCCATACTCTCCAGGAGCGTGTGCTCAAGAGCCAGTGGCAAGGCATCATGGGAGATGTGTTTATGAGGCTTACCAGCAAAGAGAGTGACTTCTTGGACTTTTATGTGTCCTACCTGAAGGAGCTTCCAGAATGTCTGTCAGTCGTCACCATGCTTTCCTCCACCTCAATGAAATCTTCTGCCTTCCTGGAGAGTGAAATAACAGGTGATGAATCTAAACCCTCCCTCCACACTCTGCTCCTTCAGCCGGTTCAGAGGATCCCCGAGTACCTGCTCCTGCTACAGAGGTTGCTAAGGCAGACACACGCAGAGCACCCAGACTACTACCTACTGCTGGTGTGCATCCAGCAGTTCAGGTCCTTCACGGCTCAGtaccaccacctcctccagcACAACCAGGAGCTTCTGTTGCACAACCGCAAAGAGGTGAAGAGGTCTACCATGAAACAGCTGTTAAAGACAGTAGAAAGTGGGATTCCAGCTAACAACATTGGCTCACCGTACCCTTGCAACAGTGCCACGTTAGAACATGTCAACCAGGTGAAGCGGAGCAAGCAGCGTCTCCTGGAGCAGATCCAGTCTCATCATTTCCAGGATTGGGATCGCGACCAGGAACCCGAAACTCATTGTTACGACACAGAGTGGCCCTCCCAGCTCCAATTCTTCAGCCCCGAGCTGGACTCACGGAGCCACAAACCAACAGGTCTTGGCAGTATCCCAGAGAGTGAAGCATCTGAGAGGTCCATGTCATGCCAGCATCATCTGCCCTCCAGACCTGCAGACTTCCGTCAGGTTCAACCGGGCTCCGCTTTGGCCGATGCCCTCGGAGAGTTCCTTCTCCCTCCAGACCCTCCAGGGATGGAGAGCCTCTATGAAGAGGACAGAAGTTCCCTTCATGATGTCTCCATGTTTGACCGCTGCTCCTCTGCCTCTTCAGATTCCTCTATTGACATTGCTTTTGTGAGGTGCCCCAAAGCCCCTTCAGCGTCACATCACGCAATGGCAGCCAATGTGTCAACAACCCGAGATGTCTTTGGCAATGGTGGAAGCCATGGGAATGGTTACAAACTGCCCAAGCGAGGATGTGTATCTCCGGATGAAGCTGTAATGATGCGCCGCAATCAGCATCGTCCTCTTCAGGCCAGCCAGCGTAAAAGCAAGTCACTGAACGGTCTGCAGATGGACAACACAGTGAGTTGTCTTGATGGTAGTCCTCTATCAGACCACCCCCAAAGGTTGGGACTGGGCAGCCATGCCAAGCTGGAGCGCCAGGGCAGTAAGGGCAGCAAGGGGTGTCCCACCCCATCCCGTAAGGTCCACAGCCCCTTGGGGAACAGACTGGATATCGACAAGCACAGTGACGATCTTCATGGACTGCTCAGCATTGACTCTGGGTTCCAATCATGGGGGGATGAGTCAAAATGGAGAGGCGGGACAGAGGAGAATAACCACACCCCATTAAGCGAGAGGAGTCGGAAGCAGGACAAAGGAGGCTTCAGGAGCTCGTTCAAGAAACTCTTCAAGAAGAAGAGCAGTGatgagaagaaagagaagggagGTGAGAAAACaccagaaaaccaaaacaacggTGAACATGAGACACCGGGGAAAAATCCCAAACTGGTACAGCTGGAGATAAACCGTGGCACAGCTGTATGAACACCACTCTATCACACACAGACTGATCAATTAGAAAGTGTAATACATACAAGTTTAAGATACAAACGGAGgttgttttacatttacaacTGCCATATAAATGCTGTACATGTATATGCCATTTAGCTAAGCAATTTTTCCTCTCATCATTtccaaatataaatgtaaatttatataaatttatataaatttatatatatacaaaatccTGCCCCTGGCCTTTATACTGAGGGAAAGCATTTGACAATGCTGTGGACGCCATTTATCAACAAAACAGTACTGCAGATTTTAGTCTTTGTAATGGTAAGAGTATAGTAACGCTTGCCCACACCAGGATGACACAGGAGGATAAGGTCCTTAGATTACATGTGTTTTGAGTCAGTTTAGATTAAATGTGACTATGCAGATTAGACCTTTTGTTAATGAAGATGTGGTCACAAATGTGTCCACTAGAGGGCATAGTTTAATACAATACATCCCCATACTGTAAACAGCTCTGCTCTACCTCCAGTTTCCCAAATCTTTTTCATAGAACAAACTCCTTTTGTTTCCCTTTTTTCCCAAGGTGCATTATTTGTACCCCAACTTTCAAATCTGTGCAAAGCTAATATAGAGCCTCTTTTGAAGTGTTTAAAGTTTGATATTGACAGATGGTTCCCCATTTGTCTTTCATTGTGGGAGAAAAGCACTCTAAACATGAGTGCTATTCCTAAATTTGACTATTTCACCCCTTAACCGGCGCCGACACCTGTTTCTTCAGTACAACTGTCTACCAGTTGTCTTAAAGTCTTAAGCCATAACCAGAAATTATTATATTGTGCATTATATACTCAGGAGAAAACACCTTAAGCTGTTACTTATTTTGTTTCATTACAAAACATTCAAGGTTTTTCTTTATGACAATTTTTTCTATGCATTGAACAGAACTGCTTTGTTAAGAGATCAATGTGACAATCAAGAGACATTAAAATTGTTCAATAAAGGTCCACACTGAAAATGTATTATGTTGCTCAGCTGGTTCCTTTTCCTTGTATCACTGGGTTATTAAAATTAGCTATACAAATTAAAATGGACTTGACTTGGACATACATGTTGTTATAAATAGGCTATTATCATTCTAGGTATGAGCAGATGAATTGATTAAAAGTTCCAGTCTTTCACCGTTAACACTTAATTTGATTCtgtaggttgtttttttttttaagccccacttataaaacatttaaatcattttaaacactCACTCACATTCAGCAGGCTGCAGATTCTTCACAAGGACCAGCTGTTTGGTCCTTGTTAGAAATGCCAACTTCTGCCACCTGCAAGCAAGAATCTGTtagctcaaataaaagaaagagggaaCATTATCGTGTCACACTATCCTTTAGTGGATATTAAATATTCAACAGTAAAACAAAATCAGCTTGTGGTTATAAAGCACCAACATTTGAATTATTCTTTTTATATTATACTTTCTTAAGATATGAACTTGTGCACAACATTAAGCTCTTTCATTGACCATTAGAGAAGGGAGCTTACAGGTAAGTATCACTATTTGAAGAAATAATCATCATACATGCTTAATATGTCAATTATGAAGCCTACACTACAAAAAAGTTGCCATGAATTTGTTTTCTTGCCTATAGATGGTGCAGGTTGACCTGGAAATGCAGCTTTGCAACTGATCAGGTTCACATCAATGtaattgtgtgtttattttggaaCTGGCCCTTTTTAGCTCTAAAATGAGGATGAGTAATTAAACAGCTCTAAATACTGTAAAAGCATCACTTTTTTACCTGGTGGACCAGTGCTCTTAGAGAAAAACACCTTTTTTAGTAGACAAAAGCAAACGTGTTACTAataatatgtatgtaatatCTGTTCAATTCAAATGTCCCAGTTAGCCATGACAGTGAGTGTGACAATGAGCCAGAATGTACAATAGCAGGACCCTGAAAGCAAAGCAGCTAACCATGAGTCAGCCATCATGAACTTCTAAATTTGTGCTTTTCCCACTGAGACGCGTCAACATGTCTTAAACTCTTCTGTCCTTCAAAAATAAACACCACAAGACCCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261710 lncRNA upstream 12927 9638381 ~ 9640978 (+) True G192692
TU261708 lncRNA upstream 15894 9634765 ~ 9638011 (+) True G192691
TU261680 lncRNA upstream 156491 9497057 ~ 9497414 (+) False kcnq5a
TU261676 lncRNA upstream 162777 9487763 ~ 9491128 (+) True G192667
TU261620 lncRNA upstream 204084 9404402 ~ 9449821 (+) True G192634
TU261733 lncRNA downstream 5484 9678736 ~ 9680975 (+) True G192713
TU261771 lncRNA downstream 94009 9767261 ~ 9772128 (+) True G192733
TU261772 lncRNA downstream 130043 9803295 ~ 9803651 (+) True G192734
TU261773 lncRNA downstream 222644 9895896 ~ 9896125 (+) True G192735
TU261774 lncRNA downstream 226876 9900128 ~ 9900926 (+) True G192736
XM_039783029.1 mRNA upstream 29785 9606525 ~ 9624120 (+) True ddx43
XM_039784387.1 mRNA upstream 51023 9496791 ~ 9602882 (+) True kcnq5a
XM_039783262.1 mRNA upstream 206429 9442876 ~ 9447476 (+) True pno1
XM_039783259.1 mRNA upstream 215995 9421344 ~ 9437910 (+) True LOC120547702
XM_039784533.1 mRNA downstream 74056 9747308 ~ 9754782 (+) False LOC120548339
XM_039784532.1 mRNA downstream 74058 9747310 ~ 9754782 (+) True LOC120548339
XM_039784531.1 mRNA downstream 74060 9747312 ~ 9754782 (+) False LOC120548339
XM_039784530.1 mRNA downstream 74063 9747315 ~ 9754782 (+) False LOC120548339
XM_039784228.1 mRNA downstream 424480 10097732 ~ 10123497 (+) True mrps5
XR_005637075.1 other upstream 29341 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 1702717 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2849353 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3148086 6485631 ~ 6505819 (+) False LOC120548025
TU261855 other downstream 641694 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 768275 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 913526 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 913570 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 913570 10586822 ~ 10588781 (+) False mrpl57

Expression Profile