RNA id: TU261733


Basic Information

Item Value
RNA id TU261733
length 239
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G192713
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9678736 ~ 9680975 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCTGTCAGAGATCTCCTGGGTGATCTCATTGGTCTTGAAACTGCGTCCCTGCATGCCATGCCTCCAGAAGGCCAGTACACTGTCTTGGAGACAAActGTGGCTTCAATCTGGAAGTTGAAGGTGAGCTCGGCTGACAACTTCCTGCTGGATTTCAACCTGCCCTGGAGGTTCACTATCTTGATACACCGGTCGAGGCAGACTAGGATAGTGTCTCTCTCTAGCTGGGTGACATGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261703 lncRNA upstream 5484 9672411 ~ 9673252 (+) False arhgef33
TU261710 lncRNA upstream 37758 9638381 ~ 9640978 (+) True G192692
TU261708 lncRNA upstream 40725 9634765 ~ 9638011 (+) True G192691
TU261680 lncRNA upstream 181322 9497057 ~ 9497414 (+) False kcnq5a
TU261676 lncRNA upstream 187608 9487763 ~ 9491128 (+) True G192667
TU261771 lncRNA downstream 86286 9767261 ~ 9772128 (+) True G192733
TU261772 lncRNA downstream 122320 9803295 ~ 9803651 (+) True G192734
TU261773 lncRNA downstream 214921 9895896 ~ 9896125 (+) True G192735
TU261774 lncRNA downstream 219153 9900128 ~ 9900926 (+) True G192736
TU261782 lncRNA downstream 329312 10010287 ~ 10010512 (+) True G192744
XM_039784526.1 mRNA upstream 5484 9653904 ~ 9673252 (+) False arhgef33
XM_039784524.1 mRNA upstream 5484 9653905 ~ 9673252 (+) True arhgef33
XM_039784523.1 mRNA upstream 5484 9653905 ~ 9673252 (+) False arhgef33
XM_039784525.1 mRNA upstream 5484 9653905 ~ 9673252 (+) False arhgef33
XM_039783029.1 mRNA upstream 54616 9606525 ~ 9624120 (+) True ddx43
XM_039784533.1 mRNA downstream 66333 9747308 ~ 9754782 (+) False LOC120548339
XM_039784532.1 mRNA downstream 66335 9747310 ~ 9754782 (+) True LOC120548339
XM_039784531.1 mRNA downstream 66337 9747312 ~ 9754782 (+) False LOC120548339
XM_039784530.1 mRNA downstream 66340 9747315 ~ 9754782 (+) False LOC120548339
XM_039784228.1 mRNA downstream 416757 10097732 ~ 10123497 (+) True mrps5
XR_005637075.1 other upstream 54172 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 1727548 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2874184 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3172917 6485631 ~ 6505819 (+) False LOC120548025
TU261855 other downstream 633971 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 760552 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 905803 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 905847 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 905847 10586822 ~ 10588781 (+) False mrpl57

Expression Profile