RNA id: TU261782


Basic Information

Item Value
RNA id TU261782
length 226
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G192744
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10010287 ~ 10010512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttcggtcggcggcagggaagtcgggactcacccggaaatgacgagcggaatgaggtgactagagtctctcaaaatctgatgaaaatcttttaaactgacctttgttgagctgaaatgaagacagattcagcaactgcatggcctatttctcgcttaaaatgttttcagaaacacgtttcagtgaactattttagtacaatatgagatcgtattctgaacggccgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261774 lncRNA upstream 109361 9900128 ~ 9900926 (+) True G192736
TU261773 lncRNA upstream 114162 9895896 ~ 9896125 (+) True G192735
TU261772 lncRNA upstream 206636 9803295 ~ 9803651 (+) True G192734
TU261771 lncRNA upstream 238159 9767261 ~ 9772128 (+) True G192733
TU261733 lncRNA upstream 329312 9678736 ~ 9680975 (+) True G192713
TU261784 lncRNA downstream 20204 10030716 ~ 10030960 (+) True G192746
TU261792 lncRNA downstream 113260 10123772 ~ 10124271 (+) True G192751
TU261796 lncRNA downstream 122024 10132536 ~ 10133232 (+) True G192755
TU261815 lncRNA downstream 196457 10206969 ~ 10219264 (+) False pank1a
TU261817 lncRNA downstream 217608 10228120 ~ 10228663 (+) True G192772
XM_039784533.1 mRNA upstream 255505 9747308 ~ 9754782 (+) False LOC120548339
XM_039784532.1 mRNA upstream 255505 9747310 ~ 9754782 (+) True LOC120548339
XM_039784531.1 mRNA upstream 255505 9747312 ~ 9754782 (+) False LOC120548339
XM_039784530.1 mRNA upstream 255505 9747315 ~ 9754782 (+) False LOC120548339
XM_039784525.1 mRNA upstream 337035 9653905 ~ 9673252 (+) False arhgef33
XM_039784228.1 mRNA downstream 87220 10097732 ~ 10123497 (+) True mrps5
XM_039783110.1 mRNA downstream 172584 10183096 ~ 10187447 (+) True zgc:65997
XM_039783112.1 mRNA downstream 182517 10193029 ~ 10212557 (+) False pank1a
XM_039783111.1 mRNA downstream 182532 10193044 ~ 10219271 (+) True pank1a
XM_039783116.1 mRNA downstream 183790 10194302 ~ 10219271 (+) False pank1a
XR_005637075.1 other upstream 385723 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 2059099 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 3205735 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3504468 6485631 ~ 6505819 (+) False LOC120548025
TU261855 other downstream 304434 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 431015 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 576266 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 576310 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 576310 10586822 ~ 10588781 (+) False mrpl57

Expression Profile