RNA id: TU261850


Basic Information

Item Value
RNA id TU261850
length 4159
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC120547507
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10264097 ~ 10292289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTAAGAGACGGAGTAAGGGAGGAAGGAAATCTTAGCGCAGACAAAAGCGCTCTTTCTGACTGGAGTTTGTTTACCACTTCACCAAAAGCTCTGGGAtttatttcacttttctttCACTTGTAGACGTTAATGTGTTGCTCACTTTGGACCTGTGGATCCTGTTTGGACTTGCATTGATATTATTAAGCCATATTTATATCACAGCCAACTTGTCATCGTGTTATTTTCGGAGCCAGCGGTGATGTCCCACCACTGACATGCACCACAGGACAATCTCCGAACCCCTCTAGCACGCGGCAACGAAACGCAGCAGGGGACATGCAGGCGGAGGCAATCGGACGAGAGATCCGACGCATTGGAGACGACTTCAATAGATTGCTTCTGCTCAGGGGGGTGGCAGGCAGACATAGACGGGTTGTGATCCATCCGAACCCGCTGCCACACATCCACCAGGAGCCGACCGTGCTGCTCTGCGTGGGCCTTCTGATCCTCCTGATTGGACGAATAATCTACTTGCAAGGCAGTACAAACAGCCAGGACAACTCTCAGGTTTAGCCTTTGGAAAACCCAGCAGACGTAGCATAATAATGTATATGTATTGAATCATTTTGGGGACCTGATTTTTTTCCAGTGGTGGAAGGAGACTTTGGACTTTGTCTATCTTAATTTCGATGGAGATAATTTGTTGACACCTTTGAGGAGCTCTGAAATGCCTGGATTTGTGTTTTTTCACCTCTGCTCCTTCACGGTCTCTGAGCCTTTGCAATGCTACCAAAGAGCCGGGAATTTGCACTTCTTTCCAGCGCAGAGGTGGTCATGTCACCTAAATATGCCTCTGTGCAAAATGACGCCTGTGGAAATTCAAATGTGCCTTGTACAGTTTCCTATTTACTTTTTTAGCTTCTTTTAAGGTGTTTTTATTGTACAGAGATTATGAATTCCTCGGGTGATCAACTCTGCAGACCCATTGTTGTTAAATGTGGGACAAGTCTGCAGATTTCCccccatattttccctctgatGGTTTCAGGCAGGGAAAAATGATCTTGCACTCCTGTCTTGTCACGATCCAACATGCAACAGACTGATTTGTGTGGGAACCAACTTGCCCAAAGTAATCATTTTTATCCACCATTTAACACTTTGTTACCATGAGTTACATGTCTGCTTATGTCTACATAGTAAGACAATTAATACTGTATACCGACTGTACACCAGGGTTTCCACATTTTATCCTGATAATTTGAGTACTAAATGACACTGGAATCGACCTATGAGATCATCAAATGTCATGACAGGATGACTATTTCAGGGAGAAGTGAGATGGGCAATAGAAAAGTTGTTGTTGTCCTCAGCAACAAACCTTGTTCTGTGTGGCAGTACAGCATTTGGATTGTAAAAGACTGGAATATTTCGAGGGAAAGTCATCATCAGGAAATGCAGATCATTGCTCGCAAACACAAGTATTTCGTACCAACATGTGGTAGGGGAACCAATGCACTCTGGACTGACGAGCACAAACAATTAACAAACAATTAAACAATTAAATTACCCACACATACGCTTGTTTGCATTCATGAGCAAAGTGTCCATTTTGTTTTGCGTGTCATATTTCAATACCCTGGGTCAAGTTTAAGTAACAGTAGCTCCTCCCACCGGTTGGCTAATATGTAATCAGGTAATCTGTAATCAGGATTATTATCTCTTCAAAGGTACTTTCAATCGATTCACCAATcttgcagctttaaaaaaaaaaaaaaagtgagaacgcaTTTCTTTGAAATTTCCACTAGTTTTCTAAACATCTATAGACATTTGTTATCTTGGAATTGCAAAATTAATGTTTTATCCATGTATTTCATGACTACTttacaattttacaatttaCTGAACCTGCCCAGACAGATTTTAACCTCTGCATTGATCAGTTTTACACAAACAAAACCTCAAGCATTGATACTAGTAAGATGATACTGTACCATACTGTACCAAATGATACCATCCTCCCTCTGTACTGAAAAACGTGTGTTTCTGTAACCCCTAGAGCCAGGTTGAATGGTGAAGACACGTGACTTCCTCCCTATTGACTTAAAATCTAACATGAGATAACCAAGCATTTTTATAatcattttttatcatttttatcaCCAAATACTGTCAGTATACATGGATTTACAGGAtgactgtaaataaaataaagcgtACTACTTTATATTTTCTACAGTCATCCTGTAAATCGATTCCCTCTTTGCTCTGATTGTTTTCAGCATTAAAACAAAGAGTTTGCACAAAAGCAGGAGCAGAATGCTTCAGCATTCTTACAATACTATGATTTGTAACTAATATGTTACTAAGCTGCCCAGTTAGTGAGTGGAACTCAAGAGCAAGATaatgaacaaaataaataatggcATCATGTCAGTCATTTAAACCATTAAACAGTGTCATTTCCTGCTGTCTTGTTTACTATTGTTCTGTTTTGCATTGTTTTCAATATTTAAAGCAATTTCCTACAATACAGTGAGTGGTCTGTCACTGTTCTTTGTTTCAGCCTCTGGATTTAACATTAGCAGCAGAGACTGAATGTAGTTGGCAAGTATTGGTTTGTTGACAAGGTCATGTCATCCGTTTATTAGCCCAGTGATTCAGACCTGGCCAAGTCTCATCATGCCTGCCAGGTCATTAAACACTCAGAGAGAGATTTTTGGACGACAACCAAACACGGAATCATGCAGAGTCAAAGAGGGGTTTGTCACTGACTAGTTAGCCAACAGCAACATATCAAACAGTGGTTATGCAGGCTTCAGATAAGGTACATGTATTCTTATCTTTGAACTCTTTAGGCTTATTAAAACATATCGGTTCGGTTGTCATGTGACGAACCAGCAAAAGTAGGCtattgtttttgtatgttttaggTTTTGGCTTACTAAAAATGCATGTTACCACTTACAACTAATTAAAACTGAACCCGAAAAACTATAAACAGCTGAGTAGCTTGCGGAAGTGTAAAAACAATTGCCAAACCAATCAGTTAATTCTCATCATTGAAGCCTTCTTTcttttaaaaccaacacatacTATTTCAAAACACTTCCGATTAAGCATAAATCTATGTGTGGCATTGCCAAGTTTGTTCAATCAGTGTCAGAAAAGCTATTTGACTGAGatctgaatataataatgatCACACTCACATTTAAAGCTTTAATCTTTAATGGAAGTTTGGCTGTTTCAAGTGAGTGTTAGCAGCACTGCAGATAATGTGTTGTTATGCGTGTTACATGTGTTGAATTTAATCTTCTAAAACAAATTAGTTCACTGTTGCTCGCTCCCTGTGAGGTTATCCGACAGCAATTCAGAGCAGCAACAGAAGTTGGTTGTAACACACTTGATAACTAATTTCATCTGAGTCTGTTTTTGAGTCACGCTGATGTTTGCACAGTTGTGTCAACATGAATGCAAATCAGATAAAGTGTGATCCTGGCTTTCATCATCCTTAAACTCTCATTTCAGCAACTTTCACATCTGTTTAATCTCATGCTTTAATAGTGTTAAATTAGTGGTTCAGCCACgaagtttcattttcaaaaaatgagGCTGtcttttctgttactgtagcttgttgacatttgtttttacaCACCACACTgaatcaagatttttttttctgtttcttcctCATCCTAATCCTGTCTTCCTGGAAATGCATGTCTCAGGCTCGTCTTCCTGTGTGCCAAAGTTATCCACTTTGCTTTTCCTCCGCTGTGACTGCATTTTGATTTCTGATATTGTGCCATGTGAAACCTAAGACCTCATTTTGAAGTACTGTATTACAGCTGGAGTGTGAGAGGAGAGCATGGCAGGGAGGAAACCGAAAGATGAATTATCGTCTTCTGAAACTGATATGGAAACCTGGTGATGAGTTGATTCCCCGCCTATCATTGAAGGTGTTACAGTTCAGAAACAGTTGTGTGACATTCAGGGTTTTACTGACAAAATCATATTGCATAATTATGTGTGTTTGAGCTTTTAGGATTATAACAACAGAAAAATCACTCAATATCTATGATCTATTAACAGTCAAATAAACATTTATactcccgttttttttttttttttattggaattgttaaaaagataaaatatgaaatatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261816 lncRNA upstream 25441 10236971 ~ 10238659 (+) True G192771
TU261818 lncRNA upstream 34202 10229462 ~ 10229898 (+) True G192773
TU261817 lncRNA upstream 35437 10228120 ~ 10228663 (+) True G192772
TU261815 lncRNA upstream 44836 10206969 ~ 10219264 (+) False pank1a
TU261796 lncRNA upstream 130868 10132536 ~ 10133232 (+) True G192755
TU261854 lncRNA downstream 22906 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA downstream 22922 10314962 ~ 10320732 (+) True LOC120547509
TU261878 lncRNA downstream 62511 10354551 ~ 10356115 (+) True G192821
TU261981 lncRNA downstream 474991 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 646319 10938359 ~ 10996645 (+) True G192940
XM_039783117.1 mRNA upstream 27156 10221560 ~ 10236944 (+) True LOC120547607
XM_039783118.1 mRNA upstream 27156 10221562 ~ 10236944 (+) False LOC120547607
XM_039783119.1 mRNA upstream 27156 10227409 ~ 10236944 (+) False LOC120547607
XM_039783111.1 mRNA upstream 44829 10193044 ~ 10219271 (+) True pank1a
XM_039782953.1 mRNA downstream 236160 10528200 ~ 10534574 (+) True LOC120547519
XM_039784931.1 mRNA downstream 259452 10551492 ~ 10557691 (+) True mtrf1l
XM_039783497.1 mRNA downstream 266521 10558561 ~ 10579945 (+) True desi2
XM_039783498.1 mRNA downstream 294757 10586797 ~ 10591293 (+) True mrpl57
XM_039783908.1 mRNA downstream 300745 10592785 ~ 10632920 (+) True kcnh1a
XR_005637075.1 other upstream 639536 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 2312912 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 3459548 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3758281 6485631 ~ 6505819 (+) False LOC120548025
TU261855 other downstream 22906 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 149487 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 294738 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 294782 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 294782 10586822 ~ 10588781 (+) False mrpl57

Expression Profile