RNA id: XR_005637071.1


Basic Information

Item Value
RNA id XR_005637071.1
length 1494
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC120547509
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10314946 ~ 10323760 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATGAGGGACAGGAGTGTAAGGATGTGGAGGATCAAATGATTGGCAGAAGCAGGAACACACTGGACTGGTCTGAAATGGCAGCTGAAGCAAATCAAGAGCCAACCACCACCTATCCACCCAAAGAAACTCCAACATCCCACAAACCCTTGCTCCTTTAATAGGAAATGCTACACACAGGCCCAAAGCCTGCAGCCAGCAGAGTTTCAGATGAGAAGCTTGTATAATCCTGAGGATCATGAAATCCTCAAGAACAACTGGATAAAAAGGACCATATACAGAGGAAGACTGGTTACACAGTTACACAGGATCTTTTGTCTTCATCAGAAAACAGCACATGGGGAATTTGCACGGGTGTTAGCTGCAGAAGAACTGACAGTACAAAGATAATAGAGACTACAGAAGTGCTTTCTGCTCAAGCTTTAATGGACTTGGACTACCGATGTTATTGTTACATTTAGCATGTACATGCTCTGTGTTGGTTCACACAGTCACAAGTGCATTGGCTTATCTGCCCTTTCTTACTACATATCCTgtgcctctttttttctcagtAAATGTGACATGTAAGTGTGACAAATGTCATGCGAGTCTGTGAGAGCAAAAGTTGTGATGCCTTGCCTTGCATACAGTTTAGGAAGTCCATCAGTTCACatctgacaaaaaatgttgcttATGAATGCTTTAAGTTTGTAATTTCTTACAAAAGATTAAGACACATTGATTTATGTTTAAGTTTTGATGTCACTCAAAGAAGACTGTAGAAAATATTGGAATACTTTTGACTTTGTTCAGGGAAGTTTGGCGCTCAGCCTGTGCTGCTGCCTCTGTGCCCTCTGGGTTAATGACAGGTTTGTCTCACACAACATATAATCGCTGGCAGTTCGCAGCGCAAACGCGTCATTCAGTGACTCAGAGTGAAATTTTGTGTTCATTCGTCTCCCCCAGACAAAAGAAGCTGCTATTCCCCTTTGGTGTGAGAAAAGTTAAATGACTCTTATTCAACACTTTCCAGGAGTCTCTGATACATACTGGATGAGGATGAAGATGTGTGATGTTTTACAGAGAAATAAATATGCTCAAAATTTAATTACTTACTTGGAGAGAATGTCAAGACTGAGTGCTGTACAACATCAGATCTCTGACTGTCTAACTGCAGCAGCTCTTCATACACTGGATGCAGGCCACGCTTagcctgtatgtatgtgtattttggTGGCCTGTGGGCTTTTATAATCTACAATTAAAACCTACCCATGGTGGGTATTTTAGGGGCAGATTCTACTATTTCCAGACTCGTTTTAGGGCGACCACTACTAAAGTGGccaactaaaataaataaattaagaatTGTTTCCCAATCCCAGAATTGTATTCCGTGTGGAAAAAGGTTGGAAACAGCATTTATACTTTCACATGTTAAATAAGATGTACACAACATGTTCATAATTTGACAGTTcagtaattaaataaaatattttaaaaaaaagttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261850 lncRNA upstream 22922 10264100 ~ 10292040 (+) False LOC120547507
TU261816 lncRNA upstream 76303 10236971 ~ 10238659 (+) True G192771
TU261818 lncRNA upstream 85064 10229462 ~ 10229898 (+) True G192773
TU261817 lncRNA upstream 86299 10228120 ~ 10228663 (+) True G192772
TU261815 lncRNA upstream 95698 10206969 ~ 10219264 (+) False pank1a
TU261878 lncRNA downstream 33819 10354551 ~ 10356115 (+) True G192821
TU261981 lncRNA downstream 446299 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 617627 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA downstream 638482 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 697408 11018140 ~ 11018931 (+) True G192945
XM_039782942.1 mRNA upstream 22673 10264097 ~ 10292289 (+) True LOC120547507
XM_039782943.1 mRNA upstream 26522 10264097 ~ 10288440 (+) False LOC120547507
XM_039783117.1 mRNA upstream 78018 10221560 ~ 10236944 (+) True LOC120547607
XM_039783118.1 mRNA upstream 78018 10221562 ~ 10236944 (+) False LOC120547607
XM_039783119.1 mRNA upstream 78018 10227409 ~ 10236944 (+) False LOC120547607
XM_039782953.1 mRNA downstream 207468 10528200 ~ 10534574 (+) True LOC120547519
XM_039784931.1 mRNA downstream 230760 10551492 ~ 10557691 (+) True mtrf1l
XM_039783497.1 mRNA downstream 237829 10558561 ~ 10579945 (+) True desi2
XM_039783498.1 mRNA downstream 266065 10586797 ~ 10591293 (+) True mrpl57
XM_039783908.1 mRNA downstream 272053 10592785 ~ 10632920 (+) True kcnh1a
XR_005637075.1 other upstream 690398 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 2363774 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 3510410 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3809143 6485631 ~ 6505819 (+) False LOC120548025
TU261892 other downstream 120795 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 266046 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 266090 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 266090 10586822 ~ 10588781 (+) False mrpl57
TU261928 other downstream 266090 10586822 ~ 10588916 (+) False mrpl57

Expression Profile