RNA id: TU261925


Basic Information

Item Value
RNA id TU261925
length 3506
RNA type TUCP
GC content 0.39
exon number 2
gene id mrpl57
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10586778 ~ 10591293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGGATGTTCGATCAATGACCCCCAACCAACCGTGGCTCATTTCTTCGGTGATTTTCGTCTGATTTGGGGCTTTTTTGCATCTTGTCGTCGTAAAGTGAACTGCATTTATCATAGTTACAAGAAATAATTTGCCACCATGTTCCTCACCCTCACCCTGCTGCGGAAAGGCATTCCTGGGAAGCAGTGGATCGGAAAGTATCGCCGCCCACGACAGATTACATGGCAGATGACACGCAATACGCTGAAGCATCTGGATCGTGAGGCTGAGAACGAATACTGGATCAGCCGGCCATACATGACTCCGGAGCAGGAGTACTGCCACGCCGCAAAGCGCAGAGCCCAGAACTGGCTGAAGATCAAGGACGCCAAATTCGCCAATTTTCCTGAACACAAGCACATCACAGATCACTTGAGTCATCTGAAAATCACTAAGACGTGGTCAAGTTAATGTGAGCAGAGAAATGACATGCAAATACTATCGTCATAATGTGACAATATCACATGTTTGTGTGAAAGAAAGTTTGGTTTCTTTATGTGTATTTATAGGTGCAGGAGTCTGTATGTCAACTGAAAAGCTACAGTGAAAAGTTTAAATACAGCTCATTGGATGAAATCTGTTTAACATTCTACACCTGATCTGTGGGACCTTACTTTCGCTCGCATTAACAAAATACGCTTTCAAGTTGAGAAAACCAGGTATCCCACCAGTTATAAAAACTAGATGAACTGCTGAAGTGTGTTCCATGAGGAAAATGTTGACAGAATTATATTAGTAGTCAGGAGAGGTTGGGGCAAAATTGTCATTTTATGAAAGGTTAATTTTACTGTAATATGCATTCTGCTGTTTTACATTTAATGTATTAAAGGGTTGTGACTGTCATGAAGCCCACGTGTAGCTGTAATTAGAGTGTTCAATTCCTTTTGAACCTTTTGAAGTTAGAAAAACCAGGAAGGAATACAATTTCAAGGTTTATGAAGATGCTCTCACTTCATTAATAGATTCTCATAAAATGTAAATCCTTTGTATGGAGAGCACTGTGATTCTCTTGAATCTTAATAATTTGcttctgctgatattttaatACATGTTAGTCAGTGGCTATTAGATCATTGTGCAGGAATTTGACCCTCAATTAAACCTCAGTTTACAGCTGCAATCAATGTTCACGTGCACGATACTGGCTCTATGACTTGACTGATAACAGTTATTGCTATTTCATAACCCTTTTTGATTCTAACACTAATACATAACTATAAGCCAGCAGgtaatcttatttttttttgttatttagacttttatttgtttttcttttctgacaTAGTCAcaaaccacatacacatacaacacaAGACCACAAACTCATCAAACATTACAATACAATGTACTGCTGCTGCAGAACCATTAGTAAATTCATTTATATGTCCAGTTTTTCCAAGTATAGCCTTCTAAAGATCCAGGGTCATCTCCTCGGTCAAATTCATAGAGGGCTAATGCAGCCTGTTCCATTGACAGCAAGTCTAGAAAGTCTTTTAACCAATTGTCTGTGTTAAAGCAATTGGGTTTATGAGTTTTATAGTTCATCATCATAATTCACTTAACAGACAAAAAGGCCAAAGCGATGATGCATTGAATACGTGTTGACTGTATATTATCTACCTTACTTTCTAGAAGGCAGAGGAGTGGGCAGTGTGGTATTTTTACAATTAGAATGGAAGACAATCTAGATATTATTTCTTTCCAAAAAATCTTCACTGCGGGGCACTGTCGCATGAGGTGTATCAGTGTCCCTGTCTCACTGCAACCATGCCAACATAGATGTGAGAGGGAGTTGTCCATTTTGTTAAGTCTGCTTGGGGTTATATACGCTCTGtgtagtaggctacttttagAATTTTGTATTTCACACATTTAGATAAAGCTGTTGTGTTTCTAGTAACCATTTCCCACTTTGCATTAGTCAGAGATATGCTCAAGTCCCTCTCCCATTGATGTATGTTGGAGGATAATCTGTCAAAGGATGCAGTGGACAATAATGTATATAGCTTTGAAACTGTTCTCCTCCCTGTGGCAATCTCCCTCAGATTTTTGTCCAGATCATTGTCACACCCTATGTAGGTTTCTTTTGAAATAAGTAATCCCAGGATTGGGGTTGTAAATATGCAAAAATGTCGACATCTCTTAAATCATAGCAGATTTTTAACTCATTAAATGGTACCATTTCACCATCCTTTACTATCTGTCCCATTTGGCATGATGGTAGGGATGCCCCTTTGAAAAGTTAACGCTTCTGTAGCAATGTAACTACCTCGCAAGACAATTTGATTAGAAGGTTGACTATTTTCAAGTTGGTTTTAGGGTAAAACCATAAAGCACATAATGAGATGGACTTGGTTTGTTCAGATAAAACGTTTTCCTCAATCCATTTCCAACTACCTAATTCGGTCTTGCATGTATAAGCCCACATAAAAGAAAACTAACATTATAAGCAAGGTAATAGGAAAAAACATCTGGAACTCCCAGTCCTGCACTTTTCCTAGGTCTGGTTAATCTTTTGTAGCTGATTCTTGGTTTCTTATTCCTCCACAGGAAATCTGTGATTAACTTATTAATTTCTTTGAACCAGTAAGGAGGGAATTTGAGAGGTATCGCTGATATAAGAAATAACAGTCTAGctaaaatattaattttaatCACTTCTGTTCTGCCCCATAATGAAATGGGTAGGACTGTCCATCTATTGATATCCTCCCTAATTGTCTTAAGAAGGGGAGGACCAATTAAATCAAAAATCTCATCTATGGGAGTCTTAGTGTTAATTCCAAGACATCTCATACCTTGTGGTTTTCACTGAATGGGAACAGAACCAAGATGTGACGGATAGGTCAAGTGGTTTAGTGGGATGGCTTCACTCTTATTGAAATTCACCTTATATCCTGAAAACTTTCAAAATTTCAAAGAATTTCATCACTTGTGTAATTGATTGTTGTGGTTGAGATACTGTTAATCACAAATCACTGGCAAATAAATTGGCCTTAAAGTCACAACCCCCAATTTTGATGCCAGAGATTTTCCTCTCTGCGCTGATTGCACATGCTAGAGGTTCTGGGGCCAAAATGAAGAGGGATGGGGAGGCGGGACAACCCTGCTGGGTAGATCTTAGGAGTTGAAAAGGTTCAGATataatgtcattagttttaatTGAAGCAATAGGGTTTTTATAGAGGGCCTTCACCCTGCTaataacaattttttttgttgacaaaacataaaacaggtATTGCCATTCTACCAATCAATCAAAGGCTTTCTCAGCATCCAGTGATATGCCAATGGCTGGATGCTGTAGAGTGTCTGCCATCGCCATTACATGGAGGAGTCTCTTCATATTGTTGGACGCAAGTCCACCTTTAATAAACCCTACTTGATCAATATGTATCAATGAAGAAAGGGCAGTCTCCATGCGCATAGCAAGGACTTTAGTAAATAGCTTATAGTCAGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261878 lncRNA upstream 230707 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 266090 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 266090 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 294782 10264100 ~ 10292040 (+) False LOC120547507
TU261816 lncRNA upstream 348163 10236971 ~ 10238659 (+) True G192771
TU261981 lncRNA downstream 175872 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 347200 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA downstream 368055 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 426981 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 426981 11018140 ~ 11018900 (+) False G192945
XM_039783497.1 mRNA upstream 6877 10558561 ~ 10579945 (+) True desi2
XM_039784931.1 mRNA upstream 29131 10551492 ~ 10557691 (+) True mtrf1l
XM_039782953.1 mRNA upstream 52248 10528200 ~ 10534574 (+) True LOC120547519
XM_039782942.1 mRNA upstream 294533 10264097 ~ 10292289 (+) True LOC120547507
XM_039783908.1 mRNA downstream 1626 10592785 ~ 10632920 (+) True kcnh1a
XM_039783911.1 mRNA downstream 1626 10592785 ~ 10632920 (+) False kcnh1a
XM_039783909.1 mRNA downstream 1626 10592785 ~ 10632920 (+) False kcnh1a
XM_039783910.1 mRNA downstream 1626 10592785 ~ 10632920 (+) False kcnh1a
XM_039783912.1 mRNA downstream 1626 10592785 ~ 10632920 (+) False kcnh1a
TU261892 other upstream 144737 10441527 ~ 10442085 (+) True G192834
TU261855 other upstream 263062 10314946 ~ 10323760 (+) False LOC120547509
XR_005637075.1 other upstream 962258 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 2635634 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 3782270 6800524 ~ 6804552 (+) True LOC120547751
TU262031 other downstream 361980 10953139 ~ 10956578 (+) False LOC120548129
TU262093 other downstream 559160 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 765881 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 774229 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 1126734 11717893 ~ 11746702 (+) False sdccag8

Expression Profile