RNA id: TU262031


Basic Information

Item Value
RNA id TU262031
length 2511
RNA type TUCP
GC content 0.37
exon number 3
gene id LOC120548129
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10953053 ~ 10956622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagacatcatcaACAGTGAAACATGGCAAATGACAAGgGTCCTCTGGGCCAGCTCAAGGACCTGGTGGAGCTGAAGGACCAGCTGGAAGACATCCAGAGACGGATGGAGGATGAGATACAGGCTGGGGTTCCTCCAGGAGGCAGTCTGCTGGCTTCTCCTTTTCTCAAGGGTTTTCTGGCTGGGTACGTTGTTGCAAGGCTACGTTCTTCAGCATTACTGGGTGTTGCCGTAGGGACGTGTACTGGGATCTATGCAGCACAAAATTATGCCGTTCCCAATATTGAAAACACCGTCAAAGACTACATACGCAACCTGAAAGGAGGACGCAAATGAGAAGAGTGGAAGAAAAGTGAGGAGGAGAGACGTCTACAATCACAGGGTGCCATTACAGCTGCACACGGGAACAGATATTTATTTCAAAGGTATAAACATTTCAATAGTTATTTCCACTTTCCACATGGATAAGTAAATAGAAATATTCTAAAGTAGTTCTAAAGCCCCTGTTATGAAGTAAGGTAAAACAGTATTTACTTTGATAACGTATACACATACATTTTGTGATAAATTCAGCATAAGCAGCATGTGGGAAGGATTACAATTCAGGTAATTTAAACACAGAATACCCCATATTTCTTCCCAAAATGGTCAGTGATTGAAATTTAAACTACTACCTATAAGAGAATTATTATAACTTGCTATAAATGATTTCTGTCCTCAACCCTGCCATATGTGCATTCTGAAGAGTTATTGATACATAATGAGACCAACCAATATCCTTATCCTTATGTGCAAGCCAGCTGTTTTGGCTATTACACCCTTTAAAAGGTTAACTCTAGAGAAACACACTACATCTATTTTGATGTCCAGATAGATATATAGTATTGAGTCTCTCCAAgaggaattttttttaaagaaaattgtctgccctctagtggtcaGAAAATCAATTATAGCAGCCCTTAATAATTTTCCATTTTAGCTCAGTAGGGTGATATAGCATGTAAATATTGCCTCACCTCACACTCATGGTGCTCTTCAGTGTAAATCCTGTGAAAACCCTTGATGTTTGCAGCTGTCAGAGCAAAGTCTGTAGTGTGGTGTGACACCTTTTCAGGGACAACACATCACTCCATGTGGTTATGGGTAAATATTTCACTTtggtaaaacattttaatttttaaataaaattatagtCCTCATCTTTGTAGAGGTTCATTCATGACAAATAAAAAGTGactccaaaaacacacactattCAAGAATAAGAAGTATTTATCTAGAGATTCCACCTCACACTGCTTAAAAAAGGTCATCCTTCAGCCTGCACACAGTTAGTAGGCTCTATCAAATTAATGTACGCCAAAGTGGAATTTTTGCTTTAAGATAAATTAGTTTTAACTGCACTTGGGAGCTTTAACAAAACAGGAAAGTATGTGTTAAAGTattatgtaaaatatatattgaGAGTGCCTACTCTGGTCTGGACTTGACATTATCATCTCATGCCATATGTGCAATAGCCTTTCCTGATGTGGTTTGGCTGCCTATTTCATATGCTGGAAACTAGTTGATCTTTTGCACTTGTAAGAATGTTAGGGATTTAAAGCTGTTACTTTGTCTTTCAACAATCAATGATTTTGTTTATTGTCCAAGAAATATCAAAACCTGTCAAAGAGAATCCGTATTATTGTGATATGTACCAAAACGGTGTCTGCATCATATTTTGAGTTGTGCGTACTGAAAggtgttatttgttttttttaaggaagaGAATTTAACAGTAAAATGGATAAATGAACAATGCAGTTGCTACAGAATACTAGTCTGAAAGTCTGAGGTGGATAACctgaatatttttttgtgttaaagctttagtgcgtaactttttgatagtAATGAGCATTCAttccattcaagccattgccaaatgagttgtgTCAGTGCGCAGTCACGCAACAACAGTTttcttgtcattacttagaattcctcattggggcatcagaaactacgcactatagctttttattaatgatttaaacccataaaaaaaatattttcacaaccAAAGGTACTGTATTGCTGCCGTTAATATTAATGCACATTGCTTATGTACACAGTCAGACCTGACACAAAAGCCATATTTTAGTTCAGATTGAGGTtgtgttcattttagtttttactttGACTGGAAAGTGTAGAAAACTATGTGTACTATATGTTTGGTAACTGGAACAAAGAAACAACTTGTGCCTATTGACAATCATTATGATGCTGTGTTTGTATTGCATGACCTTAGTTTCTTAAAGTTCTGTCTATtatgtttttgcatgtttgctTTTTTTAGTAATACCTTTCTTTAAACACTTGATATGCTGTGGAATATAGACTGATGGGTCAAATGTTGGTGCCTTATTCCACTGGCTAATCTGTCTTGTCATCATGGGTTTTTACTCAGTTTGAAATTCCTTTATGATATTGTAAAAGAAAACCACCAAAACTGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261981 lncRNA upstream 185085 10767031 ~ 10768054 (+) True G192900
TU261878 lncRNA upstream 597024 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 632407 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 632407 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 661099 10264100 ~ 10292040 (+) False LOC120547507
TU262036 lncRNA downstream 2636 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 61562 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 61562 11018140 ~ 11018900 (+) False G192945
TU262096 lncRNA downstream 178502 11135080 ~ 11139366 (+) True G192997
TU262097 lncRNA downstream 178502 11135080 ~ 11139366 (+) False G192997
XM_039784149.1 mRNA upstream 80699 10861935 ~ 10872440 (+) True LOC120548125
XM_039784150.1 mRNA upstream 80699 10861935 ~ 10872440 (+) False LOC120548125
XM_039784148.1 mRNA upstream 93588 10848185 ~ 10859551 (+) True LOC120548124
XM_039784052.1 mRNA upstream 188008 10701254 ~ 10765131 (+) True camk2g2
XM_039784063.1 mRNA upstream 188008 10701254 ~ 10765131 (+) False camk2g2
XM_039784507.1 mRNA downstream 8720 10965298 ~ 11018017 (+) True srbd1
XM_039783020.1 mRNA downstream 154790 11111368 ~ 11114805 (+) True six2a
XM_039784261.1 mRNA downstream 400462 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA downstream 400462 11357040 ~ 11367727 (+) False prepl
XM_039784690.1 mRNA downstream 474720 11431298 ~ 11433996 (+) True znhit2
TU261925 other upstream 361980 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 364088 10586778 ~ 10589051 (+) False mrpl57
TU261928 other upstream 364223 10586822 ~ 10588916 (+) False mrpl57
TU261926 other upstream 364358 10586822 ~ 10588781 (+) False mrpl57
TU261892 other upstream 511054 10441527 ~ 10442085 (+) True G192834
TU262093 other downstream 193741 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 400462 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 408810 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 761315 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 1290373 12246951 ~ 12278375 (+) True oprm1

Expression Profile