RNA id: XM_039784158.1


Basic Information

Item Value
RNA id XM_039784158.1
length 2641
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC120548129
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10953053 ~ 10956622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAATTATGAAGACAATCTGAATCTGTGAATATCCAGTGGAGGGCAGTAAAGTTCATTTTCATCAAAGCcacaagagaaagaagaagagagagacatcatcaACAGTGAAACATGGCAAATGACAAGgGTCCTCTGGGCCAGCTCAAGGACCTGGTGGAGCTGAAGGACCAGCTGGAAGACATCCAGAGACGGATGGAGGATGAGATACAGGCTGGGGTTCCTCCAGGAGGCAGTCTGCTGGCTTCTCCTTTTCTCAAGGGTTTTCTGGCTGGGTACGTTGTTGCAAGGCTACGTTCTTCAGCATTACTGGGTGTTGCCGTAGGGACGTGTACTGGGATCTATGCAGCACAAAATTATGCCGTTCCCAATATTGAAAACACCGTCAAAGACTACATACGCAACCTGAAAGGAGGACGCAAATGAGAAGAGTGGAAGAAAAGTGAGGAGGAGAGACGTCTACAATCACAGGGTGCCATTACAGCTGCACACGGGAACAGATATTTATTTCAAAGGTATAAACATTTCAATAGTTATTTCCACTTTCCACATGGATAAGTAAATAGAAATATTCTAAAGTAGTTCTAAAGCCCCTGTTATGAAGTAAGGTAAAACAGTATTTACTTTGATAACGTATACACATACATTTTGTGATAAATTCAGCATAAGCAGCATGTGGGAAGGATTACAATTCAGGTAATTTAAACACAGAATACCCCATATTTCTTCCCAAAATGGTCAGTGATTGAAATTTAAACTACTACCTATAAGAGAATTATTATAACTTGCTATAAATGATTTCTGTCCTCAACCCTGCCATATGTGCATTCTGAAGAGTTATTGATACATAATGAGACCAACCAATATCCTTATCCTTATGTGCAAGCCAGCTGTTTTGGCTATTACACCCTTTAAAAGGTTAACTCTAGAGAAACACACTACATCTATTTTGATGTCCAGATAGATATATAGTATTGAGTCTCTCCAAgaggaattttttttaaagaaaattgtctgccctctagtggtcaGAAAATCAATTATAGCAGCCCTTAATAATTTTCCATTTTAGCTCAGTAGGGTGATATAGCATGTAAATATTGCCTCACCTCACACTCATGGTGCTCTTCAGTGTAAATCCTGTGAAAACCCTTGATGTTTGCAGCTGTCAGAGCAAAGTCTGTAGTGTGGTGTGACACCTTTTCAGGGACAACACATCACTCCATGTGGTTATGGGTAAATATTTCACTTtggtaaaacattttaatttttaaataaaattatagtCCTCATCTTTGTAGAGGTTCATTCATGACAAATAAAAAGTGactccaaaaacacacactattCAAGAATAAGAAGTATTTATCTAGAGATTCCACCTCACACTGCTTAAAAAAGGTCATCCTTCAGCCTGCACACAGTTAGTAGGCTCTATCAAATTAATGTACGCCAAAGTGGAATTTTTGCTTTAAGATAAATTAGTTTTAACTGCACTTGGGAGCTTTAACAAAACAGGAAAGTATGTGTTAAAGTattatgtaaaatatatattgaGAGTGCCTACTCTGGTCTGGACTTGACATTATCATCTCATGCCATATGTGCAATAGCCTTTCCTGATGTGGTTTGGCTGCCTATTTCATATGCTGGAAACTAGTTGATCTTTTGCACTTGTAAGAATGTTAGGGATTTAAAGCTGTTACTTTGTCTTTCAACAATCAATGATTTTGTTTATTGTCCAAGAAATATCAAAACCTGTCAAAGAGAATCCGTATTATTGTGATATGTACCAAAACGGTGTCTGCATCATATTTTGAGTTGTGCGTACTGAAAggtgttatttgttttttttaaggaagaGAATTTAACAGTAAAATGGATAAATGAACAATGCAGTTGCTACAGAATACTAGTCTGAAAGTCTGAGGTGGATAACctgaatatttttttgtgttaaagctttagtgcgtaactttttgatagtAATGAGCATTCAttccattcaagccattgccaaatgagttgtgTCAGTGCGCAGTCACGCAACAACAGTTttcttgtcattacttagaattcctcattggggcatcagaaactacgcactatagctttttattaatgatttaaacccataaaaaaaatattttcacaaccAAAGGTACTGTATTGCTGCCGTTAATATTAATGCACATTGCTTATGTACACAGTCAGACCTGACACAAAAGCCATATTTTAGTTCAGATTGAGGTtgtgttcattttagtttttactttGACTGGAAAGTGTAGAAAACTATGTGTACTATATGTTTGGTAACTGGAACAAAGAAACAACTTGTGCCTATTGACAATCATTATGATGCTGTGTTTGTATTGCATGACCTTAGTTTCTTAAAGTTCTGTCTATtatgtttttgcatgtttgctTTTTTTAGTAATACCTTTCTTTAAACACTTGATATGCTGTGGAATATAGACTGATGGGTCAAATGTTGGTGCCTTATTCCACTGGCTAATCTGTCTTGTCATCATGGGTTTTTACTCAGTTTGAAATTCCTTTATGATATTGTAAAAGAAAACCACCAAAACTGTCTTTAAGAGTTTTATTTGGGTTGTAAAATAAATGGTGGAAATACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261981 lncRNA upstream 184999 10767031 ~ 10768054 (+) True G192900
TU261878 lncRNA upstream 596938 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 632321 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 632321 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 661013 10264100 ~ 10292040 (+) False LOC120547507
TU262036 lncRNA downstream 2592 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 61518 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 61518 11018140 ~ 11018900 (+) False G192945
TU262096 lncRNA downstream 178458 11135080 ~ 11139366 (+) True G192997
TU262097 lncRNA downstream 178458 11135080 ~ 11139366 (+) False G192997
XM_039784149.1 mRNA upstream 80613 10861935 ~ 10872440 (+) True LOC120548125
XM_039784150.1 mRNA upstream 80613 10861935 ~ 10872440 (+) False LOC120548125
XM_039784148.1 mRNA upstream 93502 10848185 ~ 10859551 (+) True LOC120548124
XM_039784067.1 mRNA upstream 187922 10701254 ~ 10765131 (+) False camk2g2
XM_039784507.1 mRNA downstream 8676 10965298 ~ 11018017 (+) True srbd1
XM_039783020.1 mRNA downstream 154746 11111368 ~ 11114805 (+) True six2a
XM_039784261.1 mRNA downstream 400418 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA downstream 400418 11357040 ~ 11367727 (+) False prepl
XM_039784690.1 mRNA downstream 474676 11431298 ~ 11433996 (+) True znhit2
TU261925 other upstream 361894 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 364002 10586778 ~ 10589051 (+) False mrpl57
TU261928 other upstream 364137 10586822 ~ 10588916 (+) False mrpl57
TU261926 other upstream 364272 10586822 ~ 10588781 (+) False mrpl57
TU261892 other upstream 510968 10441527 ~ 10442085 (+) True G192834
TU262093 other downstream 193697 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 400418 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 408766 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 761271 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 1290329 12246951 ~ 12278375 (+) True oprm1

Expression Profile