RNA id: TU262300


Basic Information

Item Value
RNA id TU262300
length 635
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G193161
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11715216 ~ 11715850 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACCAAAACCCACTAACATGAAGTGAATATGGAGCTTTTGGTGACCATGGAGGGACAGAGCAAGAATCATTGTTTTCAAAAAGTACATTTGAGGCTCATTCGACAGGAAGCTATCTGTTATTGTGCAATAGGAAGAGGTTGTATCCATGGTTATCTTTGTCTGACCCTTTTCCCTTTTTGTAAGCAGCAACAAACATAAATGATGAGATAGACCCTTCCACTTaacagtaaaacacacacacacacacacacacacacacacacacacacacacacacacacacatacacaaactaaACATCACTTTATAACTATGTCATTTGAAACTCCCCGGTGTCTGTGTCATTTTTGCCTGGAACTGGAGGCAACTTCCACATTGAGGTTACAGTGGGTCTAGTGATGAAACACACATCACTGTGTACTACATGATTAATGATTAATTCAAGGTACTTACAACTTTACCCCATTTTGTTTCTATTTACACACTACCATATGCAAACTTATTTACCCCTCTTATTTATAACACACTGTTATATGGttgtaaacatactgtatataaggaCACATTTAGTGTTTGTTAAtgtagttgtcaactattataACTTATCCTATCCATAATTGGTGTTAGTAAAT

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262190 lncRNA upstream 131427 11582793 ~ 11583789 (+) False rtkn2a
TU262157 lncRNA upstream 296114 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 328891 11383093 ~ 11386325 (+) True G193041
TU262094 lncRNA upstream 565008 11146804 ~ 11150208 (+) True G192995
TU262096 lncRNA upstream 575850 11135080 ~ 11139366 (+) True G192997
TU262324 lncRNA downstream 70563 11786413 ~ 11791957 (+) True G193172
TU262313 lncRNA downstream 149575 11865425 ~ 11891203 (+) False zbtb18
TU262376 lncRNA downstream 271424 11987274 ~ 11991708 (+) False G193213
TU262377 lncRNA downstream 271424 11987274 ~ 11991708 (+) False G193213
TU262378 lncRNA downstream 271424 11987274 ~ 11991708 (+) False G193213
XM_039784364.1 mRNA upstream 4810 11697606 ~ 11710406 (+) True tnfaip3
XM_039784095.1 mRNA upstream 21976 11681816 ~ 11693240 (+) True LOC120548093
XM_039783016.1 mRNA upstream 36105 11669373 ~ 11679111 (+) True LOC120547549
XM_039784192.1 mRNA upstream 131044 11574398 ~ 11584172 (+) True rtkn2a
XM_039784193.1 mRNA upstream 185989 11527317 ~ 11529227 (+) True hint1
XM_039784365.1 mRNA downstream 2043 11717893 ~ 11750457 (+) True sdccag8
XM_039784370.1 mRNA downstream 2043 11717893 ~ 11724829 (+) False sdccag8
XM_039784367.1 mRNA downstream 2045 11717895 ~ 11790539 (+) False sdccag8
XM_039784366.1 mRNA downstream 2045 11717895 ~ 11752816 (+) False sdccag8
XM_039784034.1 mRNA downstream 141137 11856987 ~ 11867686 (+) False zbtb18
TU262145 other upstream 346593 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 349612 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 562975 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 758638 10953139 ~ 10956578 (+) False LOC120548129
TU261928 other upstream 1126300 10586822 ~ 10588916 (+) False mrpl57
XR_005637161.1 other downstream 2043 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 531101 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 531101 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 571196 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 571196 12287046 ~ 12290232 (+) False sf3b5

Expression Profile