RNA id: XM_039782953.1


Basic Information

Item Value
RNA id XM_039782953.1
length 2597
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC120547519
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10528200 ~ 10534574 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCCTCGTGCTCCATGGGAAACATCCAGGTGTATAAAACGGGAGCAGAGCTGAAGGCGAACAGAAAGAGAGTCAAGAAACATCGGGTCAACAGAGTGGAGATACAACAGCGGCTCGAGATCAGGACTTTGGAAAGCGCAGCGGACAGAACAAAAAGCAGGCAACTTTCTCTAGACCACATGTGTAAAGCGATGTTACAACGGACCGGCCCCCAGCTGCTGTTCCTAATAGCCCTGTGCAGTGTGCTGTACTCCCGGACTCTGAGTCTGCCATACACATCCATGAGACCGACGAGACACGCAGACGGTCTGTTCACCAGCGGATACAGCAAACTCCTCGGACAGCTTTCAGCGCGGAGGTACCTGGAGTCACTGATCGGAAAACGGGTCAGtGACGAGCTGATGGAGGAGCCAGTAAAGCGCCACTCAGACGCCATTTTCTCAGACAACTACAGTCGCTTCCGCAAACAGATGGCTGTCAAGAAGTACCTGAATTCAGTCTTAACAGGAAAGAGAAGCCTAGAAGATGCTGGAAACAGCGACCTGGAGGAGTCCAGGAACGAACCCAACAACTTCCAGGAGAGCTACGATGACATCAACGTAGATCACCTCCTCAACAACTTTCATCTGCCACTTTGAGGAGGGGCCTGCGCTCGAGTGAAAACCTCAAGTCATCCTCATGAAACGGCTCATTCCAAAACCAACACAGTATTAATCCAAAGGACACTCGAAAGTCAAATCAGCCAATGATGATGTGTTCTCCAATGTGGTTATCTATCTATTCATCCACACAGTTCATgtttacactgtatatatacagtatatatactataatatatagaCTCTTCGGGCAGCACTGGGCAACATGCGTGTCCACGTGCACTTTGATCAATCAGCATTTGAAAATAGCAACTGGCAACAATAAAATAGAAGTACCACATTTACTTTCTTTCTAAGACCACTGTTGTTCCATTAACTTTCAATGGAACCATTTCTCTCCTAACAACTTTTTAAAGGAACCACTGTCCTATTCAAGTTGAGTGAAATTTGTCCCATCAACTTTCAGTTATGTAAACATTTGACCCATTGAATGTCAATAGAACAGCATTTACTTTCAGTAGTGTACCTTTCCCATTGGTTTTCAGTGGATCTACTGTAACTTTAGCTTTAAGTGGACAATGTTTGTTCCGATAACTTTGAATGGAAAATATGTCTGATTGAATTCTCATGAATTTTCACTCACAAAAATGTTCCATTAACTTTCAATAGATAATGTTTCCAACTTATCTTCAGTGGAACGCTAGAACATTTGACTTTCAGTATCACTTCCTTGCTTAAATTTAAGTGGAACAAACTGTAACTTCAACTGAACCATTGCTCTATTTACATTTAGTAAGAACACTTACAATCACTCTCTTTACACTCACTTAAAATGGAATTCAGTGGAACATTtgtcacattttgtttcaagATTAAACTTGTAATGGAACCATTTTACTGAGTAACTGTACTGTGTAATGGGACTACTGCCCTATTCAATTTGAGTGACTTTCAATAGAAAAACCACCCCTTTTGAAATTCAGTGGATCTTTAGCTTTAAGTGACCAATGCTTGTGGAACATCTGTGTGATTTAATTCTGACTCACTTTCACTAACCAATATTTCCATTAACTTTCAATAGAGCACTTGTACGGTTAATCTTCAATGGGACACTAGCACCATTAGCTTTCAGTGAAATCACTGATTTATATAAATTTCAATAGAATATTtgtcacattttgtttcaagtttattactattactactattactattaaATTTCAATGGAAATATTTCTCCCAATAAAGTTTTACGGAACAAGTGTTCCATTGAATTAAAAGTGAAATTTATCCCATTAACTTTCAGTTGAACATTTGACCTGTTGAACGTCAATGGAACAGATATAGTTTTCATTTATCTATTTTGTTTTCAGTGTAACTACTATCCTGTTAGCTTTCAGTGAAACATATGTCCATTTAACTCTAAATGAAACATCTGATTGGATTCTGATTCATGTTTGCTAACCAATAGTTCCATCATCTTTCAATAGAGAACTCTAGCACCATTGGCTTTCAGTGGAATCACTGCTTTATAAAAAATTCAGTTGGCCCATTTACCTTTAATTGAACAATAGTTGCATAAAATTACAATTAAACTCAAAACTCAATTTATGCATTCATTTATGTTGTTTCATTAGGATGCAAGCCTTCCATAGATGCTTTGTTCTATTACACATGGGACAATAAATTGGAAAGTTTCATCATCTGTTGTGTTAAATTCAAATTAACAGTTGTCCCATTCATTTCCAATGGTGCAATCATGATCTATGTGCTGACCGAATTGCTTTAGAGAATCAAATATGGTCATTTAATGATAAAAAGAGATACAGGATCAAGAGCAAGAGGAACACACAAATGGACACAGATGCATATAATCACTTTATACTATTCAATATGTAGAGCAAATACATTATAACTGAGCATAGCCCTGCCTTTAGCACATATAGTGATGTACACCACTCACCAAATAAaagatgttgttttatttttcagagCTGA

Function

GO: NA

KEGG:

id description
K05264 VIP; vasoactive intestinal peptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261878 lncRNA upstream 172085 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 207468 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 207468 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 236160 10264100 ~ 10292040 (+) False LOC120547507
TU261816 lncRNA upstream 289541 10236971 ~ 10238659 (+) True G192771
TU261981 lncRNA downstream 232457 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 403785 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA downstream 424640 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 483566 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 483566 11018140 ~ 11018900 (+) False G192945
XM_039782942.1 mRNA upstream 235911 10264097 ~ 10292289 (+) True LOC120547507
XM_039782943.1 mRNA upstream 239760 10264097 ~ 10288440 (+) False LOC120547507
XM_039783117.1 mRNA upstream 291256 10221560 ~ 10236944 (+) True LOC120547607
XM_039783118.1 mRNA upstream 291256 10221562 ~ 10236944 (+) False LOC120547607
XM_039783119.1 mRNA upstream 291256 10227409 ~ 10236944 (+) False LOC120547607
XM_039784931.1 mRNA downstream 16918 10551492 ~ 10557691 (+) True mtrf1l
XM_039783497.1 mRNA downstream 23987 10558561 ~ 10579945 (+) True desi2
XM_039783498.1 mRNA downstream 52223 10586797 ~ 10591293 (+) True mrpl57
XM_039783908.1 mRNA downstream 58211 10592785 ~ 10632920 (+) True kcnh1a
XM_039783911.1 mRNA downstream 58211 10592785 ~ 10632920 (+) False kcnh1a
TU261892 other upstream 86115 10441527 ~ 10442085 (+) True G192834
TU261855 other upstream 204440 10314946 ~ 10323760 (+) False LOC120547509
XR_005637075.1 other upstream 903636 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 2577012 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 3723648 6800524 ~ 6804552 (+) True LOC120547751
TU261935 other downstream 52204 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 52248 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 52248 10586822 ~ 10588781 (+) False mrpl57
TU261928 other downstream 52248 10586822 ~ 10588916 (+) False mrpl57
TU262031 other downstream 418565 10953139 ~ 10956578 (+) False LOC120548129

Expression Profile