RNA id: XR_005637075.1


Basic Information

Item Value
RNA id XR_005637075.1
length 2412
RNA type transcript
GC content 0.51
exon number 18
gene id ddx43
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9606525 ~ 9624564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTAATTGCGGTTAGTGAACTAGCTAGCTGGCAGGTGTGGAGCcaaatttaaaatgtctgaCTGGGAGGATGAGTACAGCGAGGGCGGCGTTGCTATACAGAAGCCTGCTACAAAATCAACTCCCAATGAATGGAATTTGTCACGGTATGACAGTCAaggtcaaaatgtaaattttggTGTAAGAAATGGAACCAGGTCTGCATCATCAAGAGAGTGGAGAGCCGATCGTAGCGAGGGGTTCGAGTACACAAATCGGAGAGGCGAAGTCGGTCCGTTTCCCCGGAGCACGGATCGCGGAGGCCCTGGACGACGAACTTTTGGCGATAAAAAGTCGGACTCTTCCCAGCCTGTGACTTTCACCGTGGAAAATGGTTTAGTTGGGAGGGTAATAGGCCGCGGAGGAGCCAAAATTCGTGAACTTGAGGAGAGCACCGGTGCAAGGATCAAGataaaCAATGGGGACCATGAAGCTGAGGTGGTCCTCTTTGGGTCTTCTGCTGCCCAGCAGAAGGCCAAGGAGATGATTGAAGAACTGGTAGCAGATGGCAACTCTCGATTTCGCAATGGTCCTGGTAGAGGGGGAGACTATGGTGGAGCAGATGATGGAGGAGGCTACAGAGGGAGAGGTGGTGGAGGAGACCACAGAGGgagaggtggtggaggaggagaccACAGAGGGAGAGGTGTTGGAGGAGTAAGGGATAGCTCTGTCTGGTCTGCTGCAGAATTAGATGCTGCAGATGTTGCCCCGCCCCCTGTATCCATAGACTGGAACACCATCCGGGAGAATAAGGACAAGTATGCAGAGCTCAAGTGGAAGGACCTCCCACCCTTAAAGAAGAATTTTTACACTGAGGCAGAGAGTGTATCCATGCTCACAGCAGAGGAAGTCCGTGAATGGAGGAAGGAGAATAACAACATCTTTGTGGACGACCtgaaggaggagggggagaaacGTCTTTTTCCCAATCCTTGTCGCACTTTTCTGGAGGCCTTCGAACTATATCCAGAGATCATGGAAAATATTGAACGAGTTGGCTTTGTCAAGCCAACACCCATCCAGTCTCAGGCGTGGCCAGTGTCACTGAGCGGAGAGGACCTGATAGCCATTGCTCAGACAGGAACAGGCAAAACCCTGGCCTACCTGCTGCCAGGGTTCATTCACATGGATGGACAGCCTTTGCCTAGAGCTGAGCGGGGTGGTCCAGGCATGTTGGTGCTGACTCCCACCAGAGAGCTGGCCCTGCAGATTGAAACTGAGTGCAAGAAGTACAGCTACAAGGGCTACAAAAGTGTCTGTATATATGGTGGAGGGGATAGGAGAGCCCAGATCAACCTGGTGAGGGGGGGCGTGGACATAGTGATCGCTACACCAGGCCGACTAAATGATCTACAGATGAATGAGCTCATTAATCTTCGCTCAATCACCTACTTGGTGCTGGACGAGGCTGACCGTATGCTAGATATGGGCTTTGAACCCCAGATTATGAAGATTCTCCTGGACATTcgcccagacagacagactgtcatgACCAGTGCCACCTGGCCTACCGGTGTGAGGCGATTGGCCAAATCTTATCTAAAGAATCCCATGATGGTTTATGTGGGCACCCTAGACTTGGCGGCTGTTAACACAGTGCAGCAAACAGTGCTGATCGTCCATGAAGACGAGAAAAAGTCCTACGTGTTTGACTTCCTCAGAAACATGCTGCCCACTGATAAAGTCCTTATCTTTGTTGGCAAGAAGCTTGTGTGTGATGACCTGTCCAGTGACATGTGTCTGCAGGGCCTGGCTGTGCAAAGTCTCCATGGTGACCGTGAGCAGTATGACCGTGAAGAGGCCCTCAAAGACTTTAAAGATAGCCGAGTTCGTATCCTGGTTGCTACAGATTTAGCATCTCGAGGGTTGGATGTCATTGACATAACGCATGTCTTTAACTATGACTTCCCACGTAACATAGAGGAGTATGTCCATCGCGTGGGCCGAACTGGCCGAGCAGGACGCTTAGGTGCTGCTGTTACCCTGGTAACAAGACAAGACTGGAGGATGGCCGCTGAGCTGATTCCCATCCTGGAGCGAGCGGGACAGGAGGTCCCTGAGGAGCTGGTGCTTATGGCAGAGAGATATGAGAGGCACAAGAGGGAAAAGGAGCTGTGCAATCCAAGGGGagggggaggtggaggaggaggtggcggAGGAGGATGGGGAAGGAGAGATGGTGGAGGGAGAGGAGGCAGGGATCGAAGCCAAAACTGGGGATTCTAAATGCTTGATTGTCCAAgctgaaaaGGCACCAAAAAAAGTTTACCTGGAAGATGCCAAagTGATACCCTGCATCAAGTCCAAGCACTCATCTGCAGTACGTGGACAGGAAGTGACTTTGCTCAGCTGAACATGTAAGATTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261680 lncRNA upstream 109111 9497057 ~ 9497414 (+) False kcnq5a
TU261676 lncRNA upstream 115397 9487763 ~ 9491128 (+) True G192667
TU261620 lncRNA upstream 156704 9404402 ~ 9449821 (+) True G192634
TU261618 lncRNA upstream 187201 9397548 ~ 9419324 (+) True G192633
TU261508 lncRNA upstream 411109 9190018 ~ 9195416 (+) False meis1b
TU261708 lncRNA downstream 10201 9634765 ~ 9638011 (+) True G192691
TU261710 lncRNA downstream 13817 9638381 ~ 9640978 (+) True G192692
TU261703 lncRNA downstream 47847 9672411 ~ 9673252 (+) False arhgef33
TU261733 lncRNA downstream 54172 9678736 ~ 9680975 (+) True G192713
TU261771 lncRNA downstream 142697 9767261 ~ 9772128 (+) True G192733
XM_039784387.1 mRNA upstream 3643 9496791 ~ 9602882 (+) True kcnq5a
XM_039783262.1 mRNA upstream 159049 9442876 ~ 9447476 (+) True pno1
XM_039783259.1 mRNA upstream 168615 9421344 ~ 9437910 (+) True LOC120547702
XM_039783260.1 mRNA upstream 168615 9422099 ~ 9437910 (+) False LOC120547702
XM_039784595.1 mRNA upstream 272527 9327374 ~ 9333998 (+) True LOC120548362
XM_039784526.1 mRNA downstream 29340 9653904 ~ 9673252 (+) False arhgef33
XM_039784524.1 mRNA downstream 29341 9653905 ~ 9673252 (+) True arhgef33
XM_039784523.1 mRNA downstream 29341 9653905 ~ 9673252 (+) False arhgef33
XM_039784525.1 mRNA downstream 29341 9653905 ~ 9673252 (+) False arhgef33
XM_039784533.1 mRNA downstream 122744 9747308 ~ 9754782 (+) False LOC120548339
unassigned_transcript_1115 other upstream 1655337 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2801973 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3100706 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 3105430 6485631 ~ 6501095 (+) False LOC120548025
XR_005637124.1 other upstream 3245534 6324515 ~ 6360991 (+) False itsn1
TU261855 other downstream 690382 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 816963 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 962214 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 962258 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 962258 10586822 ~ 10588781 (+) False mrpl57

Expression Profile