RNA id: XM_039783118.1


Basic Information

Item Value
RNA id XM_039783118.1
length 4772
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120547607
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10221560 ~ 10236944 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tATATTCAGTTTGCGGGCTTAGTTGTGTTGCAGAGCACCTTCAGGGTGCAGGAGAGGCAGCAGCAGAGAAACACGTGTTTGTTCTTTGTCTTTGttcgtttttatttatttttatttgatcgCCTGTTTGCGTTTCTAGTCAGTTGAGCCGTGAAGCGGTGGCACAGGAGGAGCTAAGACCGAATGTAAGCGAATTGAtcgagaaagaggaagaaggagcaaacagaaaggaaagaaggcCCTTTGAGTTTTCTGAAGATCTTTAAGCAAGTGACTGCGGTTTTGACAGAACAAACCCAGCCAATGAAAACGTGCTGTGCATTTAGAGACAAAAGGGGAACATTGAGGAGTGGACTTGTGACCTCCAGCATTCCTTGTAACAGAGGGCGAGCTCACTGATGTCAGTCTGCCTTGTGATTGGCTGGAGCGATGGCAGGTACCAAGGTGGAGAAGCTCGAGGGAGGCAAAAGGCCACCGGGGGTCATGGCCCCGCCGGAAGGTGGCTGGGGCTGGATGATCGTCGCTGGATGTTTCCTCGCCACCATCTGTATCCGGGCAGTGACcagATGTGTTTCCATGTTCTTTGTGGAGTTCCAGCTGCACTTTGAGAAGGATTATTCGACCACCGCCTGGATCAATAGTCTGATCGACGCCACCACCATGCTCTGTGCTCCTCTGGGTGGTTTCCTTGGGGACCGACTCTCCTGCAGAGCTACAGTGATCCTGGGAGGTCTGCTGTCTTCTTCTGGTCTGGTCCTCAGCTCCTTTGCTTCCAGTCTGGAATATCTATACATCTCCCTGGGCATCCTCCCAGGTCTTGGCTTTGCTCTTAGCTACACACCAGCTATAGCGATGGTTGGGAGGTACTTCAGTGAGAGGAAAGCTCTGGCCTATGGCATCGCCATGTCTGGGAGTGGCATTGGGACCTTCATTCTGGCTCCTGCAATCCAACTGCTTATAGAGCATTACTCCTGGAGAGGAGCTCTTCTCATCCTGGGAGGATTTGTTTCcaacctgtgtgtctgtggtgctcTGATGAGGCCGCTGGAACCAAGAAGAAGTGAAGGGATATGGGAGAACAATATGGCAAACCTGGAAAAAGATTGTATGACAACAGCACTGGATtccaaagacacaaaacaagtACCTGCTGATTGCAGCCAAGTGGAAGCAAAGCAGCTGGAAATAAACAACTTAATGGATACTCAAAGGCTGCTTATCGCCACTGGAGCGCTCAAAAACTTTgaccttaaaaacaacaaactagTTCAGGGGAACATAGCGCTGTTATCAAGTTCAAGCCCGTCTGATCGGAAGATAGCTGATTGCATTTTATTTAGCAACAAGCTAACAGAGACAGTGCCAGGGGGGCTCAAACACTCAGATCACAAACTATCAAATGCTAGCACAACTGAGGACTCAAAATTGGTGGAAAGCATGAAATTGAAAAAGGCAGCTGACATGGATGCTAAGATAGCAGAGCCTTTAGTGAGCACAAACACTTCATCCAGAGGTCACTGTTTTTGTCTCGAGTCCAGGGAAGAGTTTAGATTTCTTGTGATACCCGACTTCCTGATTCTGTCTGTGTCCTTACTGTTTCTGGCTTATGGCTGCAGCGCTCCAGTAGTTTACCTGGTTCCTTATGCTCTCAGCATGGGGTTGGAGTCCCAGCAGGCTGCCTTCCTCATGTCCATATTTGGAGTCAGCGGCATTGTGGGTAACATCACCTTTGGATGGATCACGGACAGGAAGTATCTGAAGAGGTATCGCATGCTGAGCTACATGATGGCAATAGGCATGGAtggcctttgctgcatgttcaTCCACCTCCTTCACTCCTTCCCCCTCCTGGTCCCATTTTCTGTACTCTATGGGTACTTTGACGGGGCATATGTGGCGCTTATCCCAGTGGTGACCTCTGATGTTGCGGGCTCCACCTACCTGACCTCCGCTCTGGGTGTTGTCTTCTTCCTGCATGGCATCCCCTACCTGATTAGCCCACCAATCGGAGGTTGGTTAGTAGACAGGACAGGAAATTACAAGGCAACCTTCTTTCTCAGCGGGGCTTGCTTCCTGTTCAGCTCTGTGGTTCTAGGAGCTGCCATGCTCGTCAGACGCTGCCAGACGTCCAAGTCTCACTCAGCTGCACGCTTAAATCCCAatcacactgctgctgcagctcagcAGGGCATCATATGACAATGCAATCAAGATGCTGCTCCTCCAACTGCATGGATGTGCACCTTACCACTGCTGGTATGTTCAGGTGCTATTTTGATATGTATTATACACTGTTGATGTGTTTTGGACATGACACTTGAAGCTCAGACTCAACAAGAGCAATGCTGTCAGAACCTGTGCCTTTAAAGAAACAATGTTGTGACTTTAAGACACTTATTATCTTGAAATGGCGTTCTTTTTTCAGTAAgagatttctgtttgtttgatgtggatcttttgttttgtaaaaCTAAAGGGCATTCACACTTCACGGACGCCAAAACTTGCAAGCACTTTGTCATTAACATTCACCGTCTTTAGTGAACTTTCCAATTATGTTGAGATGTTCACTCTGATTTAATACAAAATGTTGCtattcaaaaaaatatattattgaaaaatatatatttttaaacttggcccttattttccaaaatggtCCATCTTGCCAATTGATTATGTTGAACATTTCATTACTACACTTGCAGGTATGACTGCAGTGTAAGCAGTTAAAACAATGATACTCTCACCAGTATTTACCTTTTGAAATATATTTGAACAATTATGATACATCTGGTCTTGTAGCCCTAGTAAAAAATTGCTCAAATTGCTTAGTGATTTTGCGTTGCTGGCTGTCAGTTTCCCGCTATGTTTGTACCATATCAGAAGAAAAGTGTGATTCATTTGCATGTATCATGAACATGTGAAAGAAATGTTAATGTTCTTGCACACCATCACGTCTTAGTAGGAAGTGCAAGGGACCAAAACACTGCAGACTGAGTCTGTGTGaagcaaaaataaatgtgttctgAGTCTGTCACACCACAGTAAAATGTAGTAAGCACCCAGACAAAAGTGTGACTAAATAAGCAGTATTTTCTGCTTTGAGATGCTGGGGGCATGTCCGCAAGGGACTGATGCTGTGTGCTATGGCTCTAACATTAGTAGTAACCATAGACTGATAGCGACATCGTTTTTATACAGTAGGGGAGGGGTTATGTTAAAGATGACCCCGGTGTGTCCTTGAACCATGATTTCAGACCGCCCAAAAAATCCTGGACAcagaaatggttaaaaaaaacaactgtttaATGGTTTTACTCCACAATTCACTACTACACAGTTTACAGTCTACTCACATGTTTTCAAcaagtattttttaacataatgtgATTGGAACAAAATCACTGATTTTGCTTTACCTGAAATGTAATGATGATGGCTAGATATGCTCAGTTCACCATAAACTTATAAAGAATCATGAACAACATATAGTAGGATATTTCTTATCAAGGATGCTTGATTGTATTAATgtgaaaacaaataataatttcaATACCTCAGATTACACAACCTTTATTTCTAAGAATATGAAACTGGCTTTTAGCCTGCACTGGAGCTGGTCTCTCTCTAAAGGAATCCATATTTGGGAAAAGTCGTATTCATACTGTGATTAGTGATATTTTTGTTGAAGGACAATAGAAGAAATcttgtttgaaaaaaacttaGGTAACTTTTTCaacaagttacatttttttcacaataaTTTAAAACTGAAAATCATCGACATTCTTTAGACTTTAATTTAGTGATTTAATTGTGTTATGTCTTATGTCAATATTCACCTTGCCTTTTAATATGCGGTGTATCCCTAtacattaatgttattatttacaGCAACAAATATCAAAACATGTGAGACATTTCAAGCTAAGACAATGTGCTGAGTTCTTACCCTACCAACCCTTACTCCACAAATGCTAACAGGGGGTTAGGGTAAGCTTAATCCAtttgtaataaaaatgaaaaaatgaaaccCTTAACAGAGTTTAATATGTGAAAATAATCTTTTAGAAAATACCACACAAAAAATGGGAAGGAAGAGGTGACAGTCCCCTTATACCTGGAAAGCTGGAAAGATGAAAATGTCTGAACTGGTGCTCATATTTAGCCATTTGTGCTTAACTTTTAAGACTAGTGTGTGGTTTACAGTGACCAATAAACCTCTTTCACTATGAAAACcatattaaaaatataactCAAGACCATGAAAGTCAAGGAcagttgtgtttggtgtgtgctaaTCATGTCACTTGACAAGAACCTAAATGTGATAGttttgttaaaggtccaatgtgtaggaatttatcccatctagcgttgagatcgtaTCAACTCTCTttcaccacgcagttcaaatgacgtattacagctacggtagccttgacgcttcaaaaagccggtctttttcttttttcaatgtcctttttctttttctgggcgaagaagaggactcctgttcctgaaacttagattttgaatacgtgCATGAGGAAgagtggcaatcgggagagTCGGAATTTTCCAGGTGGGCCGGTAGTGTTTCGAGGCCGCTCCGGCCGGTCTGATCGTCCGCTCCGGTAGCCGCTGCCCGCTGGTCAATCTAATCTGTACGGTGGGCTGCGCAGcctcttatttatttaattaatttatactgtttattgatccccagtggggaaattacaatttacactctgtttgttagaaatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261815 lncRNA upstream 2298 10206969 ~ 10219264 (+) False pank1a
TU261796 lncRNA upstream 88330 10132536 ~ 10133232 (+) True G192755
TU261792 lncRNA upstream 97291 10123772 ~ 10124271 (+) True G192751
TU261784 lncRNA upstream 190602 10030716 ~ 10030960 (+) True G192746
TU261782 lncRNA upstream 211050 10010287 ~ 10010512 (+) True G192744
TU261816 lncRNA downstream 27 10236971 ~ 10238659 (+) True G192771
TU261850 lncRNA downstream 27156 10264100 ~ 10292040 (+) False LOC120547507
TU261854 lncRNA downstream 78002 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA downstream 78018 10314962 ~ 10320732 (+) True LOC120547509
TU261878 lncRNA downstream 117607 10354551 ~ 10356115 (+) True G192821
XM_039783111.1 mRNA upstream 2291 10193044 ~ 10219271 (+) True pank1a
XM_039783116.1 mRNA upstream 2291 10194302 ~ 10219271 (+) False pank1a
XM_039783112.1 mRNA upstream 9005 10193029 ~ 10212557 (+) False pank1a
XM_039783110.1 mRNA upstream 34115 10183096 ~ 10187447 (+) True zgc:65997
XM_039784228.1 mRNA upstream 98065 10097732 ~ 10123497 (+) True mrps5
XM_039782942.1 mRNA downstream 27153 10264097 ~ 10292289 (+) True LOC120547507
XM_039782943.1 mRNA downstream 27153 10264097 ~ 10288440 (+) False LOC120547507
XM_039782953.1 mRNA downstream 291256 10528200 ~ 10534574 (+) True LOC120547519
XM_039784931.1 mRNA downstream 314548 10551492 ~ 10557691 (+) True mtrf1l
XM_039783497.1 mRNA downstream 321617 10558561 ~ 10579945 (+) True desi2
XR_005637075.1 other upstream 596998 9606525 ~ 9624564 (+) False ddx43
unassigned_transcript_1115 other upstream 2270374 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 3417010 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 3715743 6485631 ~ 6505819 (+) False LOC120548025
TU261855 other downstream 78002 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 204583 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 349834 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 349878 10586822 ~ 10591159 (+) False mrpl57
TU261926 other downstream 349878 10586822 ~ 10588781 (+) False mrpl57

Expression Profile