RNA id: XM_039783182.1


Basic Information

Item Value
RNA id XM_039783182.1
length 2962
RNA type mRNA
GC content 0.50
exon number 7
gene id si:dkey-174i8.1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10681261 ~ 10691085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctagacaatctcctgaactccaaactgaatgtcagaatgggaaagaaagATGCAGTTTGACACACATTCCCTCCCTTTAGCTCCAGCAACAGAGATCCAGATCAACCCGCCCCCTCACAGCGGTAAAACAGAGTTCATGTCACCCTGCATTTCCCTGAGGCAAACTGATGGCTACACCCAGAGACCCAGACGTACATACACAGCAAGACAAGTTGCCTAGGTCTTCCCAGCCATCGTATGAGGCGCCTGAAAATACAGAGGAATGTAGCAAGGGTTACGGAGACATTGGCTACCATGGCTCAGACATCCACACTCCTGTGTTGGACCAGCTGGCGGCAGAGGGGGTCAAACTTGAGAATTATTACGTCCAGCCTATCTGCTCACCCTCTCGCAGTCAACTCATGACAGGGCGCTACCAAATACACACTGGACTCCAGCATTCGATCATCCGATCACGTCAACCGCTCTGCCTGCCCCCGGGCATCCCTACACTACCAGAGCGTCTGGTTGAAGCTGGTTACGCTACACACATGGTGGGAAAATGGCACCTGGGCTTCTGCAGGCCAAGCTGCCTACCCACAGGACGTGGCTTTCAGAGTTTCCTGGGCACACTGACTGGCAGTGGGGACCACTTCTCCTATCGGAGCTGTGACGGGGCTGAAGCTTGTGGATTTGACCTGCATGATGGAGACAGGCCTGCCTGGGAGATGGCCGGCAACTACTCCACTCTGCTGTACATAGAGAGAGTGAAGCAGATCCTGAGGAGCCACGACCCCCATAAACCACTCTTCCTCTATCTGTCCCTTCAAGCCGCCCATACACCCTTGCAGGTACCAGACCATTTTTTGCACCGCTATGATTCCCAGGAGAATCGTCTCAGGCGCAACTACGCAGCCATGCTGAGCTGCCTGGATGATGGGGTTGGACAAGTTGTCCAGGAACTGAGGACTAGTGGGCTCTATCAAAACTCCGTACTGATCTACTCATCTGATAACGGTGGGCAGCCGCTCTCTGGGGGGAGCAACTGGCCGCTGAGAGGTGGCAAAGGGACCTACTGGGAAGGGGGCATCCGGGCTGTGGCCTTTGTGCATAGTCCCCTCCTGAAGAAGAAGGGTGTAGTCAGCAGAGCACTGATCCATGTTTCTGACTGGTATCCCACATTATTGGGGCTGGCTGGGGCCCCACAGTCCCACCGTGGCCTTGATGGTCACGATGTGTGGGGGACCATCAGCGAGGGCCTACCCTGTCCTCGCACTGAAATCCTTTTCAACATTGACCCAGTCTCCAGGAAGCCTGGGGAACCATATGACAAGGCGTTGGTACTCAACGGCTTTGGGATCTGGGACACAGCCGTAAGGGCAGCGATAAGGGCTGGGGACTGGAAGCTACTGACAGGAAATGTGGGTGACGGGGACTGGATACCCCCACAGGCTCTTCCCGGTGGTCCAGAACGGTGGCAGAAACTTGAGAAGCGGCGCAGTGAGCTAGGGAAGTCAGTTTGGCTGTTTAATGTCACCTCTGACCCCTACGAGAGGTCAGACCTGGCAGAAGCTCGTCCAGAGGTAGTGAAACATCTGCTGACAAGGCTGGCAGAGTACAACCAGACAGCTGTGATGCCCAGGAATCCACCAGATGATCCTATGGCTGACCCTGAGCTCCATGGAGGGGTGTGGAGCCCCTGGCTGGGCCTGGAGGGACAGGAGGGGGATAATGGAGGGGAGGATGGCAGGAAAGAAAGGATGAAGATTAAGCACTGCAAAGTATGCAAATTAAAAGCCCTGTTTAAGAAGGTGGAGTCACGCCTGCAGAGGAACACCCTGTTTTTCTAAATGTCTCATCTAGCTAAATTGATTACACTAAAGGCTTCAGTATGCTTCAAATTAATTAGGTTGTACATGTGTTGTCTAAGCACATCTGAAGGCAAAACTGTTAATACCTGTTCCCATtggccacgctcaaagttgggGCAAAAAGCCTGCGGTGAGGTGCAATGAATCATACAAATGCGGACAACGGCACACAGTCGTATATAGTCTCTCCTCAAAGGCATTCATGGTGTGCACGTGAAAAGTTGCAGAAGTAGTTTGAAGAATGAAAAAAGAATCCTGCATACTTTTTCATCTCCAGACTCCTGGTCAGTCACTGTGTAAGTTGGCGTGCTAGTATTGTCAATTTTGGAAAGTTGCTAAAATTTGCAAATGCAGGTGGGTGGCGTGGGGGGGACTGTTCAATCATCTGGCAAGGACTTAATTTGAAGCATACTGACACCTTTACCAGGGGGAAGTTAAAGGGAAAAGGAGATGGagacaaacaaaaatacagacAAGCAGGCAGGTCAGATAGACAAGATAAAGCCACAATCAAATACTGAAGGTCGGCAGATAAACAGGCAGCCTGATAGAAAAGCAGAAAGGGCTGTGCGGCTGGCTAAGCAAGCTGACTCACACTGCCCTGCAGCCAAACTGCAGCAGGGTGACTTTGGGCCGTCGTTGGACTGCGTAAGGAGCAATCTGTGTGTCATTGTGCATGTATGCCTGTATTTGTGAATAGTTTGACTGCAGATAGAGCGCATGCATGTGGAAGTGAGGCCTGAAGAGATGGAAAGAGGATATAAGGGTGACGTCTCGATGTCTCATCTCCTAATCATCCGAGAGAACCCTTCAAGGACGACACAAAGACACCCCGGGGGTGGTTTTTATCAAATGTCACCTCGTTCTTTTGTTAAGGGGTTATACAGATTCACTTCTTTTCATACTATAGCACACTCTTCTGCCTTTGAAAGCCCTTTGACCACCACACAATATCCAGTGCCAACCGTAATGACTAACCAACGAAAGCTCAGTAGCTAATGCTTTCAGTCTTTTCTGgacttttaaatgttaaataactCATGTACTGTGTTATGGAATGCTGGAAATCTAATTCAAATtatctaaataaaaaatcaatgCAAAAAGATCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261878 lncRNA upstream 328365 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 363748 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 363748 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 392440 10264100 ~ 10292040 (+) False LOC120547507
TU261816 lncRNA upstream 445821 10236971 ~ 10238659 (+) True G192771
TU261981 lncRNA downstream 75946 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 247274 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA downstream 268129 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 327055 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 327055 11018140 ~ 11018900 (+) False G192945
XM_039783908.1 mRNA upstream 51560 10592785 ~ 10632920 (+) True kcnh1a
XM_039784052.1 mRNA downstream 10169 10701254 ~ 10765131 (+) True camk2g2
XM_039784063.1 mRNA downstream 10169 10701254 ~ 10765131 (+) False camk2g2
XM_039784060.1 mRNA downstream 10169 10701254 ~ 10765131 (+) False camk2g2
XM_039784073.1 mRNA downstream 10169 10701254 ~ 10765131 (+) False camk2g2
XM_039784053.1 mRNA downstream 10169 10701254 ~ 10765131 (+) False camk2g2
TU261925 other upstream 93321 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 95429 10586778 ~ 10589051 (+) False mrpl57
TU261928 other upstream 95564 10586822 ~ 10588916 (+) False mrpl57
TU261926 other upstream 95699 10586822 ~ 10588781 (+) False mrpl57
TU261892 other upstream 242395 10441527 ~ 10442085 (+) True G192834
TU262031 other downstream 262054 10953139 ~ 10956578 (+) False LOC120548129
TU262093 other downstream 459234 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 665955 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 674303 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 1026808 11717893 ~ 11746702 (+) False sdccag8

Expression Profile