RNA id: XM_039783260.1


Basic Information

Item Value
RNA id XM_039783260.1
length 3202
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC120547702
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 9421344 ~ 9437910 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAACTCAGTAATCTGGCTTTGGAAGGAGATATTCCACTTCAACCTGCATTTTGCACCAAAATCTATGAATATAACAGTgccagacaaaaacatcaaagttACAGTGAATCGAGAGGACAGCTCACAACCGGTCCCTCTGAATTTTGGAGACACTGTGGTGGAGATCTCAGTCTGTTCAGCAGATGGCAGTAATTCACAGGTGTACACAGTGTTGGTGACTCGAGAGTTAATCCCCATGGCTGTGACCTTCACTGATGAGAAGCAGCAGCTGGACTATGAATGTCCAGTATCTCTGACTGCTTTATATAGACCCATATCTATCAACCACAGTGACCCAAAGCACATCTTCTCAAGGCCTTATATCGAGATGCTGGCACGAAGATCAAAAGTCGACCCACTTAGCGATTGTCCTCTGGGAGACGGCTGGAAGGTTGTTGAACTGGACCTTGACAGGAAGATGTCTGCTGCTCGGGTCAAGTGTTTCTTTACTTACAGAGgaTGTGACAGTGTGATGGAACTGTCTGAGCTGGGGTCACACTCTCTGGACTGTCCACACAAACCCACAGGGGACCTGGATGCAAAGGATGTGACAGAGACTGATTGGTATAAGCAGCACTTTGCATCATCCAGTTGTTTGGAGATAGAGACTAAACACAGTTTGGAGGTGCGTAACTGGGAGAAAAGACTACAAATGACAGTGGGAGAAGACAGTGTGGATAAACTGTGTGCCTTGGCCCAGGATAACACAAAGCTCTACTGGCAACGCCTGCCAAAGCCAGGGGATGTGTTGCAGTATGAGGATGGCCAGTCTCCTCTGCATAGCCTGGAGCAGGCTGCTGTCCACTATGCATCAGCAATCAGACTCAGCTCCAGAGAAGCCAGACTCCACTTCCTGCTGGGTCTCGTTCTGGAGGAGCAGCACTACGCTACAGAGATGTACGGCCTCCAGAGGAAGgttgacagagacagagatgaaTTAAGCGACGCCAAAGCAACAGCGTATCAGGATGACATCCTGGCTGTGTGCAAGCTCCATGGTTTCCTCGGCACGCCCACGGTGGAGAACCAGCTGCAGGCCTTGGATAAAGAGTATCAGCAGCTCAAAGAGCAGGGACAGTCCAGCAGAGGAGACTATGTTCAGACACTCTACATCTGGCTCTTCAAGAAATCTGGCAAGAATAGCAGTGCAGCCGTGCGGGATGAAGAGAGCTGTGTCCACCGGGCCCTGATGAAGTACCTGGATGCCTGGTCTCTGAGTCCTGACAACTGGGAGTACAGCCTCCACATAGGAAGGCTTCTGCTGCTGCAGGGGAGGAGCAGGGAAGCCCTGCAGCACCTCCAGAGCGGCCTGGCACTGCGCCCACTACACCCTGCTCTCAGATTCTTCACAGGGCTTGCTCTGTtgcagcaggagcagaaagCCTCTGAAGACACAGAGAAGGAGGCTGCTCTGTTCTTACAACAGGGACTGGAGCACTTTGTCAGCCAGCGCTGCAGCAAGAgCTGGATGGACCAGGATCCATCAGCCCCTCTGTCCAGCATTAGCACACAGTTCCTGCGAGGCCTTCTCACTCTGGGCCAGCTgcaacagagaaacacactgtCTGAGAAGGCCTTGAGTGCAGAGCAGGTCTATCACATTGTAGCAGTGCTGACTGCCCAGAGTgtgagtcagtgtgtgtgtcgtggCGAGATAATGGGGCAACTGGAGTGGGTGCTCCTGGATGCTCAATTTGCCCTGCTGCAGAGGCTGATCGAGCAGGGTGAGCGCCAGGCCAAGGCGGGCATCGAGAGGCAGTCCCTGGTGGCCAAGAGATGCCAGTCCCTCACAGCTCTCATACGCCTAACCTCTATCGCCCCCTGTCAGGAGCTGCTGGACATGCAGGAGAGGGCATGCCAGCTGGCAGTGGTGACCACACCGCGGGACAGCCACGCCCTGTGTCTCTTGGGTCTGGCACAGCTGGCTCAATATGACAACAACCCAAATTCCGACAGATCAAAGGAAGCCATAACAGATGCCTTCCTTAGCTTCCAGGCCAGCATTGAGCTGGAGCACAAGACTCAGAGCGGAGAGCCACTTAAACAGCTGAGCAAACAAAAGTGGTGGCAGGACCGGCAGGAGGCTGAAAACAAGAAAGCTGCGGGAGTGACCGGTGTGGCAAAGAGAGGAGCTCTGCGGGGCAGGGGACGACCTGGTCAAGGACGGGTGGCAGCAGCTGTAACCAAAGCTCCTGCTCCTACCCCCCCAGACCCCATCAGGGGAGGGAAAGCTGCCCAGCCTCCAGCCAAAATCCATGCAGCCAGGGGAAGAGCTGGAGCAGCAGCAAAGCCAGATAGATCGGCTAAACCTTTCAACAATGGTACACAAGGCCAGCTCCCTGCCAACAAGTCTGCTGAGACAGCGGAGGAGCCCGCTGTGGCAGACAAAGTGAGCGGGTCCGGTCCGGTGAACCGCAGGTCTCATAACTCACGGCTGGGTCTGGCCCGTGCCCTCTCCCGCTCTGCAGACACCCAGGACCAGGCAAAGCAGCTCTACCAAGAGGTCATCTCCATGGCACCAGGGGTCCACGATGCCTACATTGAGCTCGTGCAGCTGCTGGAGCCATCAGACCCTCAGGCTGCAGTGGAGGTGTACTGCAGATTCCCTCTGAAGACTGTGGCCCAGCAAAGCTTCGATGATGCCTTCATCACAGGAGAGATCGTCCGCATGCTGATGACGCTGGAGCTGTACGACCACCCCCAGCTGGGCCCCAGCCTCGTAGCATACGGCAAAGTCATGGGCCTAAGTTGCATAGACAAATACATCGACATCTTGGATGGGAAGTGTATGACCAAGCTGCTGAAGAGTGTCTACGCACAGATCCATGACAGACAGGAGGACGATCAGGAACTACAAGATTTCTTCAAGTTCAAATGCTGGACATAATAATGCATGTAATTCTCTAACAAATACCTGTATTTATTATCTTTTTGAATCCTTGAGTGACTCACAGTTTGCTTACTGTTTACCGAATAGACTGGTGTTGCTCTAAAGACACTTTCTTTGTGCATACATATAGTAATCCTCTACACCTTACACCTGATGTTATAAATAAGCCATTTATTTTAGACAAGAGGACACTGAGAAAATGGTCATCTTTTTCTCCAAAGGCACATTTAATTTGAAAACACTGAGTTATCAATAAAAATGACTTATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261618 lncRNA upstream 2775 9397548 ~ 9419324 (+) True G192633
TU261508 lncRNA upstream 226683 9190018 ~ 9195416 (+) False meis1b
XR_005637142.1 lncRNA upstream 363681 8977204 ~ 9058418 (+) True LOC120548135
TU261676 lncRNA downstream 49853 9487763 ~ 9491128 (+) True G192667
TU261680 lncRNA downstream 59147 9497057 ~ 9497414 (+) False kcnq5a
TU261708 lncRNA downstream 196855 9634765 ~ 9638011 (+) True G192691
TU261710 lncRNA downstream 200471 9638381 ~ 9640978 (+) True G192692
TU261703 lncRNA downstream 234501 9672411 ~ 9673252 (+) False arhgef33
XM_039784595.1 mRNA upstream 88101 9327374 ~ 9333998 (+) True LOC120548362
XM_039784170.1 mRNA upstream 227707 9114656 ~ 9194392 (+) True meis1b
XM_039784166.1 mRNA upstream 473994 8930547 ~ 8948105 (+) True LOC120548133
XM_039784351.1 mRNA upstream 494610 8917427 ~ 8927489 (+) True aftphb
XM_039783262.1 mRNA downstream 4966 9442876 ~ 9447476 (+) True pno1
XM_039784387.1 mRNA downstream 58881 9496791 ~ 9602882 (+) True kcnq5a
XM_039783029.1 mRNA downstream 168615 9606525 ~ 9624120 (+) True ddx43
XM_039784526.1 mRNA downstream 215994 9653904 ~ 9673252 (+) False arhgef33
XM_039784524.1 mRNA downstream 215995 9653905 ~ 9673252 (+) True arhgef33
unassigned_transcript_1115 other upstream 1470911 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2617547 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2916280 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2921004 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 3061108 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 168615 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 877036 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 1003617 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1148868 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1148912 10586822 ~ 10591159 (+) False mrpl57

Expression Profile