RNA id: XM_039783267.1


Basic Information

Item Value
RNA id XM_039783267.1
length 4537
RNA type mRNA
GC content 0.53
exon number 38
gene id lrpprc
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11434600 ~ 11492318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCGGATGCCCTTCCACGGTGCGACAGAAAACATGGCTGCGCTCTTGAGATCAGCCCGGTTACTCAAGTTTTCGCCTTCGGGCTTGCTTCAGATCACAGGGACCAAACGAAACGGGCCGACACTCAGTCGTCTGTACAGCGGAGCTCTCGGCGGCAGAGGGACCGGAGTTTGTTCCCGACAAATAAGCCCTACTTCGGGAAACGCGTCCAGTCGTGTGTGGCCATATGCGGTGGGGTGTGTGCGTAACTATGCTGTGGCCACAGAGCAGAAGGATGAGGCCAGCGCTGCGGTGCGGTCCAAGCAGGCGCAGCAGTTTGACTGGGCTCTGGCCAAGCTGGACAGCTCTGTGAGGAGAACCGGTCGCATCACCAAGACCCTGTTGCTCCGCATCTTCCATGATATCTGCAGGACAGgttaTCCCAGTGGTAACCAGGCCTTGTTACTGCTGCGTAGCTGTGGGTCGCTGCTGCCCGAGGTGCCCCTGGAGGAGCGCTCTGAGCTGGCACACCGTGTGTGGGAGAAGCTGCAGGAGTTGGGTGCACAGTATGACGTTAGTCACTACAACGCCTTGCTGAAGGTTTACCTGCAAAATGAGTTCAAGTTCTCCCCCACTGACTTCCTGGCCAAGATGGAATCAGCTAACGTCCAGCCCAACAGAGTTACCTACCAGAGACTGATAGCAGCCTACTGCCAAAATGGAGATATCGATGGAGCCAGCACCATTTTGGGTTTCATGAAGAGCAAAGATTTGCCCATCACTGAGGCTGTTTTCAACTCCCTGGTGACAGGCCATGCTTGTGCAGGGGACATCGAGAGTGCTAAGAACATCCTGCCTGTGATGCGGGGAGCAGGAATTGAACCGGGTCCCGACACTTATGTTGCACTGCTTAATGCCTACGCTGCAAAGGGAGACCTGGACAGTTTAAAAAAGACTATGGAGGCAGCAGAGAGTGCCGACTGCAGTCTGATGGACAGGGACGTCATGCAGGTCATCTTCACTCTGGCCAAGTCCGGACACCAGCAGCACATCCCAGAGATGGTGGAGCGCTTGAGGCACGAGAGGGGCTACGTTCCAGATGCCATGAACTTGTGTCTGAGCCTCATCACCCAGAGGCAGGAGGACACAGCTTTTCACATCCTGAAGACTTTCCCCACACTGCAGTCTGAAAGCTTCAACACGGAGTCTGCCAACCTGGGCAACTTCTTCCTCAGACACTGTGTCAACATGGACACGTCACTGGAGAAGATCGGCAGCTATTGCAAAGAGCTCCAGGAGTCTAATCTGCACACTGCGGCGCTCAGCTTCACTCTGTCCTGTGCACTAGAGGCCAAGAAGATCGGGAGGTCTTTAGAGCTGATGAAGATGTTGAAGGAGCAGGACTTTCCCATAAGGCCTCACTACTTTTGGCCCCTCCTCACTCAGCATGTGAAAGACAGCAACACAGctggtgtggtTGAGGTGGTAAAGGGCATGCAGGAGCTGGAGGTCTGCCCTGATGTTGAGACTTTATCCAACTACATCCTCCCTGTCTTCCCCAGCATGGAAGCAGCTCGACAGGCCCTCAAgGATGCAGGCATCTCTTTGGAGTCGGAGGGCTTCTTGTCTTCAGAGGTGCGTTCAGTGGCTGTTAGCAACCTGGCTGAACTCTACACCATACTGTCTGATCCCTCCTGCCCCTCGTTGGACCTCAGTATTTTCCGCGGCAGCCTCATCCTGGGCTTCAGAAAGTCTTCTGATGTGGAGAGCATGGTGAAGATTACTGAGCTTTTGTACAAAGACGAGCGCTTCGCTAAAGGAAGCTCCAAGGCTTCTGAAGCGGCATCCTACTTCTTGTACAATGTGATCGACAGCATGTCAGAGGGAGAGGTGCAGGCACAGGAAGACAAACTGCGCAAATACTTCAATCAACTACAggctcagAACATAACCATTTCAGGCAACATCTACAGAGGTATCAAGAACCTTCTGGAGTCCTACCATGTCCCAGAGCTCACCAAGgACGTGGTTGCTTTGGTGGACCCCAAAGACAGAGTGTCCAATGGCTCTGTGTCAGCTGTTCCCCGTGTCACTGGAATTGAGGGTAAGGTGTTGGCACTTGAGAAGAAACTTGCCGAGCTGAAGGCAGAGAACAAACCATTAGGCAATGTTCTCAAACAAGCCATCCAGACTCTTTGCGCCGAGGAGAACCTGCAGCGCGCACTTGAGCTGAAGCAGCAGCACGAGGAGGAGATGACAGTCGGCGGCTATGCCACCCTCATCAACCTGTGCTGTCGCCACGACAATGTGGAGGAGGCGCTCAACCTGAAGAGGGAAATGACTCGTAAGGACTCATCAGTCGTACTGGATGCCAGTAAATACATCGCATTGGTCAAGGCCCTCTCCAAGAATGACAAAGTGGAGGAGGCAGTGGACATCCTGAAGgagatgaaagagaaagaggtggTGATGAATGACACACACGTCACCATGCTCTTTCACACGCTCAACGCCGTGGTGGCCAAGGGCGGCGCCCCCACCATCAGACGCCTGCAGGACACCATCTTCACCCTTGGACTGGCCAAGCCCACCGCCAATCTCTGCTCACCCCTCATTACTGCCTACCTGGACAGTAAAGACCTGGCTGGAGCTCTAGAAGCAGCACTGGAGTGTCAGAAGCGCTACAACCACCTGCCTCGCATCCACGACATCGTTGTTGCTCTGGTGGAGAAAGGAGACACCGAACTGCTGCAAAAAGCCATGGACTTTGTTAGTCAGGAGCGAGGCGAGATGACCATGCTGTATGATCTGTTCTTCGCATTCTTGCAGACAGGCCGCTACCGTGAGGCTCGTAAGATCATTGAGaCCCCAGGGCTGAGGGCACGGCCTGGACGCCTGCACTGGTATGCAGAGAAATGCATTTCATCCAAtcagATGGAGGCCTTGGAGCAGATGGTGGACATGACAACCAAGCTCTTTGAGTGCGACAGGGATGAGATGTACAGTTACATCCTCCGtctttgcaAGGAGACAAACGACTGGCAAAAGGCAGAAGCAGTATGGACGAAGATGCAGGAGGAGAACGTCATTCCCAGGGAGAGGACCCTGCGTATGCTGGCAGACGTCCTGAAGAATAATGGCCAGGAGGTGCCCTTTGAGGTGCCTGAGACCTGGTACCAACAAGCTGCCACCACACAGCAGGTCAAGTCGGCAACAACCCTCCCCACAGCCGAAAGTGGTGCTGAATACCAGGCCCGTCTGTTGGCCTTCTGTAAAAGGGGCAAAGCTAAAGAAGCCTATGGGATGCTGAAGGAAGTTGATAAAAAGGGTGTGGTATTAGGTCCCGCCCCTTACGATCACCTGATCCGGGCCCTGTTGGCCGAGGGATCCATTGAGGATGCCATGGCAGTTAAGGACATTGCTGCGTCTCATGTGCCAGGCTTTCAGCTGAGTGATATCGCCACCAATCTGCtcatcatcacacacagcaAGAAAGGCCAGGCTAAAGATGCTCTCGAGAAACTGAAGTCTATGCTGCAGGTGGACCACGTGCCTTCACAGCTCGCCATCACCAGACTGGTTCAGGCCCTGGGTAGCCAAGGCGACGTGGCGGGCATCCAGGAAGTGGAGTCACTGATGAAGGGCCTCGGCACGACCCTCAACCTGTCCAGCATGGTGTTTGTCAACAACACGGCCCTCGCACACATCAAGAATGGTGACATGGAGTCCGCAGTGGAGGTGTTGGAGGCAGTCTTCACTAGTCCAAACAGCACGACCCCCAGTATGTCCTTCGTCTTCAGAAAGATCTTGGAAGATGACAATGACAAAGCCTTAGACAAGTTGAGTGCTATGGCAGAGCGGCTAGCCAACCACTTTGCCTGCTACAGACCAGCTTCAGACCTCTTCCTCCAGCTGCTGGATATGGACAAAGTTGAGGATGCCAAGTTCATGCTGGCtCGCTGTAACGCCTTGGCTGAACAGAAGGAGGTGCTGGTGTCCTACTTGTCTCAGAAGGCTCAGCGTCCTGGACAGGTGGGCAAGATCAAGGCCCTGCTGAGCCTGATTCCAGACTTCACTGAGAAGGAGGTGTTGTACCCATACTTGATGAAATGTCATGTCCTGGATAAAGACTTATTGTCAGCCAAGGCTCTGCAAGAGCAGATGCAGAAGGAGGGGATAGTCATAGacgagctgtcactcaaacggCTGGCTGTGCTTTACCGCAATGCAGGAGAGACTGTGCCCTTCGTGGAGCCCCctGAGTCCTTTAAGTTTTATGCAGACAAGCTGAAAGAGAGAGCGGCAAAAGCCCAGACGACAGCTGAGGCATAAAGAATCATCCTCCTCACCTCCATCCAAATCCCACGGTTTTCCtcgtttgtcttttttttttttatatataaattgtCTGAGCTGAAATGTTGAgtattgtgttataactgttggATGATAGACTCTGTCCACTGTGCTATTGAgaatattgatgatgatgatgatgatgatgatgatgttgggaATGTACAGAAGTATTTATGCTAATAAATGTCACATTCTGAG

Function

GO: NA

KEGG:

id description
K17964 LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262157 lncRNA upstream 15498 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 48275 11383093 ~ 11386325 (+) True G193041
TU262094 lncRNA upstream 284392 11146804 ~ 11150208 (+) True G192995
TU262096 lncRNA upstream 295234 11135080 ~ 11139366 (+) True G192997
TU262190 lncRNA downstream 90475 11582793 ~ 11583789 (+) False rtkn2a
TU262300 lncRNA downstream 222898 11715216 ~ 11715850 (+) True G193161
TU262324 lncRNA downstream 294095 11786413 ~ 11791957 (+) True G193172
TU262313 lncRNA downstream 373107 11865425 ~ 11891203 (+) False zbtb18
TU262376 lncRNA downstream 494956 11987274 ~ 11991708 (+) False G193213
XM_039784690.1 mRNA upstream 604 11431298 ~ 11433996 (+) True znhit2
XM_039784261.1 mRNA upstream 66873 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA upstream 66873 11357040 ~ 11367727 (+) False prepl
XM_039783020.1 mRNA upstream 319795 11111368 ~ 11114805 (+) True six2a
XM_039784507.1 mRNA upstream 416583 10965298 ~ 11018017 (+) True srbd1
XM_039783269.1 mRNA downstream 15777 11508095 ~ 11518919 (+) True abcg5
XM_039784193.1 mRNA downstream 34999 11527317 ~ 11529227 (+) True hint1
XM_039784192.1 mRNA downstream 82080 11574398 ~ 11584172 (+) True rtkn2a
XM_039783016.1 mRNA downstream 177055 11669373 ~ 11679111 (+) True LOC120547549
XM_039784095.1 mRNA downstream 189498 11681816 ~ 11693240 (+) True LOC120548093
TU262145 other upstream 65977 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 68996 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 282359 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 478022 10953139 ~ 10956578 (+) False LOC120548129
TU261928 other upstream 845684 10586822 ~ 10588916 (+) False mrpl57
XR_005637161.1 other downstream 225575 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 754633 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 754633 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 794728 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 794728 12287046 ~ 12290232 (+) False sf3b5

Expression Profile