RNA id: XM_039783269.1


Basic Information

Item Value
RNA id XM_039783269.1
length 2803
RNA type mRNA
GC content 0.47
exon number 14
gene id abcg5
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11508095 ~ 11518919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTTGTTTGGAGTAGCACACTGGCCGGAGACATGAACAAATTTTATTCAATGCAGGTGGAGCCAGAGAACGGGACCAAAGTTAGAGAGTCCTTCAAGTTTGTGTTGGAGGAGAAGAGGGATGTATGGCAGAACAATAGAGAGGAGCGATCAGAGCAATCAGAGCCCTCCTGTTGTCTCAGTGTCAGCAACATCTCCTACACAGTCAGtgagCGTGTGGGTCCGTGGTGGGACTTACCCTCCTACAGGAAGCGATGGACTCGTCAGATCCTCAGTGATGTCTCCTTCCACGTGGACAGTGGGCAGATCATGGGCATACTGGGCAATTCAGGCTCAGGAAAGACTACATTGTTGGATGCCATCTCAGGGAGGATTAGAAACTCTGGTACACTGTTGGGTGAGATCTTCGTTAACGGCATGAAACTGAAGAGAGAAGAGTATCAGGACTGTTTCTCCTATGTACTGCAGAGTGATAACTTGTTGAGTTATCTGACAGTGGAGGAGACTCTGACCTACACAGCCCAGCTGGCCCTGCGGAAACACTCGGCCAAAACCATCAAGAAGAAGGTGTCGCAGGTGATGGCCGAGCTGAGTCTAGGTCATGTGGCCCACAGTGTTATAGGAGGTCGTGTTTTCCCGGGGATCTCTGGGGGCGAGAGGAGGAGGGTCTCCATTGCCAGTCAGCTACTTCAGGACCCAAGGGTGGTCCTATTGGATGAGCCGACCACTGGGCTAGACAGCATGACCGCCAATCAGATCGTGGTGCTGCTGGCAGAGCTGGCCAGGAGGAACCGTATCGTCATAGTAACCATCCACCAACCACGCTCCGAGCTCTTCAGGGTGTTCAGCAGGATAGCTATTATGAGTCGTGGAGAGCTGGTGTTCTGTGGGCAGCCAGAGGAGATGGTGGACTTCTTCAGCCAATGTGGATATGAGTGTCCAGAGTACTGCAACCCCTTTGACATCTATGTTGACTTCACCTCAGTGGACACACGCAGCAGTGAGAGGGAGGCAGCCACCTTTAGTCGCATGCAGGAGATCACTTCAGCCTATCAGAAGTCTTCCATCTACCAGAGCATGCTGGAAAAAGTGCAGCAGAGCCTGCAGCGGGCAGACAAGCCAGCCATCCCCTTTAAGAGCAAAGAGTCACCTAGTGGTGCAACCAAACTTGAAGTTCTACTCAGgcGGACAGCAAGAAACCTGTCCAGAGACAGGATGGGTGTTCTGATGCGTTTGTCGCAGAACTTGATCTACGGTCTCTTTGTGGCCTTCTTCGTGATGCATTTAGATAATGACGTCACCAAGGGTGCTGTGCAAGACCGCATTGGCATCATCTATCAGAGCATTGGTGCTTCACCCTACACTGGCATGCTGAATGCTGTGGCTCTCTTCCCAGCGTTGCGAGCCATCAGTGATCAGGAGAGTCAGGACGGTCTGTACAGTAAATGGCAAATGTTCTTGGCCTACATCTTCCACATCCTGCCTTTCAGCATACTGAGTGTTTTCATCTTCACCTCCTTCCTTTACTGGACGGTGGGGATGCACCCTGACAGCTTGCGTTTCCTGTGTTTTTCTGCTGTAGTCCTGGTGCCACATATTACAGgTGAGTTGCTGACTGTGGTGCTATTAGGAGTGGTCCAAGACCCTAACATGGTCAACACTGGAGTGGCTCTGCTCAATATTGCAGGGATCATGGTGGGATCTGGCTTCCTAAGGAGCACCCAGCAGATGCCAGTGGTCTTCCAGTGGCTCAGCTACCTGACCTTCCAGAAGTACAGCTGTGAGCTGCTCATAGTCACAGAGTTCCACGGACTCAACTTCACATGCAATATTTCCAAACCTTTACCAGGAGCCTGTATTATCACTCAAGGCAGTCAGATCATTGATGAAGGTTATCCTGGCGCTCTGTCCCGATATACGCTGGACTTTGTTCTCCTATACTCCTTCCTGCCTGCTCTCCTGCTGCTGGGCATGATCAGCTTCAAGATCAGAGACAGGCTTGTACGTCACTAAAACTACAGAAACAGATTTGTGGGAGAATTTTctgtttaaagaaagaaaagaaaggaagatGAACTGAGTTTGGTTGTGAAGATCTAAAACTGATTTAGAGAATAGATGTACGGTATGTTAGACCCAGAAGATGTGGAATGCTGTGGCTCCTGCTTACACGTATCATTTGTGTTTGCATCCCTTCCAGCAACATTCAACGAATATTTCTGTGTAGGCACTTACCTTAAAGTTTTACAGAATAAAGTATTATATAGTTCAGAGCAATGATGCAAATACAAAGAGCTTTTGTCAGACATGTTCTCAGAAAAATCAGCGTGCAAGGTACAGTACAGAGGTGGTTAATCTGTGTTAACTAGGATTCAGCCGTGGACATAAACCACCTGATATGACTGCTTAATAACGGAGTGGTCCCAGTACTAAACTAAACAGCACCATGAATCAACCTGCTTTAACACTGATTGGGCTCAAACAAGCTTCTGTATAGTTTAAATATGCAGTTTCTGACTGGAACAAATATCTGCACTGAtgtcaaattaattatttttatataaaagtatatactgtacaaagTGGTACATGTAAACTACAGCTTAAACTATAAATCACTGTTTTGATTGAAAATGTAATGATGGACTAGTGTCTATCATTGAATACCAGAAGAGTATCAACGTTCTAAGCACTAAAATGTCACCAATGAATTGCAtgcattatgtttttgtttaaatattgtGATTGTAATGTATCATGAATAGGAAGTGATGCTTATTGCAATAATGTTAAATCGTTTATT

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05683 ABCG5; ATP-binding cassette, subfamily G (WHITE), member 5 (sterolin 1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262157 lncRNA upstream 88993 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 121770 11383093 ~ 11386325 (+) True G193041
TU262094 lncRNA upstream 357887 11146804 ~ 11150208 (+) True G192995
TU262096 lncRNA upstream 368729 11135080 ~ 11139366 (+) True G192997
TU262190 lncRNA downstream 63874 11582793 ~ 11583789 (+) False rtkn2a
TU262300 lncRNA downstream 196297 11715216 ~ 11715850 (+) True G193161
TU262324 lncRNA downstream 267494 11786413 ~ 11791957 (+) True G193172
TU262313 lncRNA downstream 346506 11865425 ~ 11891203 (+) False zbtb18
TU262376 lncRNA downstream 468355 11987274 ~ 11991708 (+) False G193213
XM_039783267.1 mRNA upstream 15777 11434600 ~ 11492318 (+) True lrpprc
XM_039784690.1 mRNA upstream 74099 11431298 ~ 11433996 (+) True znhit2
XM_039784261.1 mRNA upstream 140368 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA upstream 140368 11357040 ~ 11367727 (+) False prepl
XM_039783020.1 mRNA upstream 393290 11111368 ~ 11114805 (+) True six2a
XM_039784193.1 mRNA downstream 8398 11527317 ~ 11529227 (+) True hint1
XM_039784192.1 mRNA downstream 55479 11574398 ~ 11584172 (+) True rtkn2a
XM_039783016.1 mRNA downstream 150454 11669373 ~ 11679111 (+) True LOC120547549
XM_039784095.1 mRNA downstream 162897 11681816 ~ 11693240 (+) True LOC120548093
XM_039784364.1 mRNA downstream 178687 11697606 ~ 11710406 (+) True tnfaip3
TU262145 other upstream 139472 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 142491 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 355854 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 551517 10953139 ~ 10956578 (+) False LOC120548129
TU261928 other upstream 919179 10586822 ~ 10588916 (+) False mrpl57
XR_005637161.1 other downstream 198974 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 728032 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 728032 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 768127 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 768127 12287046 ~ 12290232 (+) False sf3b5

Expression Profile