RNA id: XM_039783415.1


Basic Information

Item Value
RNA id XM_039783415.1
length 4209
RNA type mRNA
GC content 0.47
exon number 10
gene id ugp2b
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8750738 ~ 8795592 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGGGCGAggcgaaaaaaaaacattacgaGAGGTTGGGAGTCACAGACATGAATTGTGACGTGGGCAACAGTATTGGGGCTGGAAAACGAGAGGCAGGCACCGCAAGCAATAAAAGATCCTCCTAGACCCGATACAGCTTCATGTTCAGGGACGGCATCTGGCTGCTGTCCATGGAGATAAGTGTGACtgtccttgtttttatttttataagtaCGTGAAGtagaaaggacgtctcatcctcCAGAGCTTCAGTGGGGAATTGACTGCACAGGCTGGACACCTCTGAGTAAATGAACAGTTGGCTTTTTGGATGGGCCTACCTCAAGGGAACTTTTTTCACGGAATGTACCTTTCAATGACACTTCGGCTTTCACTTTGAATCCCCTCTGGAATATTTAACTTGAAACTCAGTTTAGGATTAACGTTATTATTTAACTGTATATATTGCTGAACTGGTCGCTAACTTTACTTGGCATCTGAAAAAAATGGCACTTTATGTAGAAGGTCTGAGTAAAGGAGTGGCCAACGGAGGGATGGCTCAGTTCCAGGAAATGATGCGACAGCAGCTGGAGAGCTCCATGCACACCGAGCTGGAGAAACTGCTGGACACCACCACAGGCGCAGAGAGAGAGGTGTCCAGGAAAGACTTTGAGGGCTTCAAGAATCTTTTCCACAGATTTCTGCAGGTGAAGGGTCCATCGATAGAGTGGATCAAGATACAAAGACCTCCAGAGGACTCGATCCAGCCCTACGATAAGATCGCTGGCCGAGGCCTGCCGGACAACGTGGCTGACTGCCTGAACaaactggtggtggtgaagctGAACGGAGGCCTGGGCACCAGCATGGGATGTAAGGGCCCCAAGAGCCTGATCAGTGTCCGCAACGAGAACACCTTCCTGGACCTCACGGTGCAGCAGATAGAGCACCTGAACAAGACTTACAACACAGACGTGCCGCTGGTTCTCATGAACTCCTTCAACACAGACGAAGACACCAAGAAGATCCTGCAGAAGTACACACACCACCGTGTCAAGATACACACCTTCAACCAGAGCAAATACCCTCGCATCAACAAAGAGTCGCTCCTCCCTGTGTCCACGAACTTGAGCACAAACGGGCAAAGCGCAGAAGGCTGGTACCCTCCGGGGCACGGCGACATTTACGCCAGCTTCTACAACTCGGGCCTGTTGGAACAGCTGATCGCGCAGGGCAAGGAGTACATCTTCTTGTCCAACATCGACAACCTGGGAGCCACCGTCGACCTCCACATCCTGCACCACCTGGTCAGCCAGCCCAACGGCAAGCGCTGCGAGTTCATCATGGAGGTGACGGATAAGACGCGCGCCGACGTCAAgGGTGGCACGCTGATCCAGTATGAAGGTAAACTGCGTCTGCTGGAGATCGCCCAGGTGCCCAAAGCCCACGTGGACGAATTCAAATCAGTGTCAAAGTTCAAGATCTTCAACACCAACAACCTGTGGATCTCTCTGGCTGCTATCAAGAAGCTGCAGGAACAGAAGGCAATGGACCTGGAGGTTATAGTCAACCCCAAGACGCTTGACGGCGGGCAGAACGTCGTCCAGCTGGAGACGGCGGTCGGCGCCGCCATCAAATGCTTCGACAACGCCCTGGGCATCAACGTGCCTCGCAGCCGCTTCCTGCCCGTCAAGACCACGTCGGACCTGTTGCTGGTCATGTCCAACCTGTACAGCCTGGACGCCGGCTCTCTCACCATGAGCCCCAGGAGAGAGTTCCCGACAACGCCGCACGTCAAACTGGGCAGCTCCTTCACCAAGGTTCAGGAGTACCTGACCCGCTTCGAGAGCATCCCCGACATGCTGGAGCTCGACCACCTGACGGTGTCTGGAGACGTCACCCTTGGGAAAAACGTGTCGCTCAAGGGCACCGTCATCATCATCGCCAACCACGGAGACCGGATTGATATTCCGGCCGGCTCCATGCTGGAAAACAAAATCGTATCTGGCAACCTCCGCATCATGGACCACTGACGcctttttcacacacaaaacGCTCCCTCCCCGCGTGACCTAGTCGGCTTTATCCCAGCGATGTGACCCGTCATTTTTCACCGCATTGTTCTCCCTAAAGGGTATGTGTGATTGTATGTGCAGTGCTACTCTGCAGCTTCAACATTAGGTAGTACTTTACATGGTTGATGGTTGGGAGTGCTTGTAGCTGGGATATCCTGCCCCCTGCAGGCTGtttattataaaatgtaaacctcaAATAGTGTTAATAATACCCTACCTTTAGCGGTTATATTAAACAATGACTTAAATCCATGGtagagagaaaaacaacaaatcagattctattttttattatctttttaaCTGTGATTTTGACTGTTCCTTTCTGCCAAAACAGACTCAAAATagatactataataataataataataataataataatgttaatttATCATCGTCTTCATGCTCTGTGTGCTCTTACAGCACTGCTAATGCAATCACACAGTGTACTTACATAGAGAGGTAAAGTCATGATGAGTTTTGACCATTTATTTCAAGCACTAAGATCTCACTATCAGACTCAGCATGGTTCCACAAAATACAGCGGTGACAAGATCTGTCCAACTGAAAGAGATAACCGATATAATGTGCAGTTGTCCAGTATCTGTACCTGGGGCTAGAGCCTGTCCTAGCTCACAgatatttacaatacatactAATAAGCAACCATTGACACTCCCACGAAGTTCAGTTTCCAGTTCATCGtccacgcagacacacacggaGAACGGCCACGCAGAAAGATTCGAACCCTTCACTGAGACACCATACCGCCCTGTGATAACTCAAATGAAAGATAAAATAAGTGTTAAAATCACTCCTAAATTTGTCTTCTTACCTCAGACGTATCATCCATTCTAGATGAACATGGACGGATATGAAGCATGTTCAAGCGTCCACTGAAGAGACGAAAACATCACATCTGTGTGGCCCAATGGGGGAGGCTGTAACGTTCCTCAAATCAGTACATACAGCAGAccacgttttttatttttttgttcagttGAGGTTAGACTGCCGCGGTTTTCATTATGGAATCTCGTTGTGCCCTTTCTTTCTTCTGCAATGTTCTACGGAAACTGGACTGGAGAATTAGTGCCAGTAGTGGATAGAAAACGTGCATTCATTTCCCTCGTTGCCTCGTCGTCGTAGCATTAGCGCAGAGTGGGTTCATCGGAGAGTTTTTGCTCTAAACGGCTGCCTGCTGCATCTGAAAATGATGCTTGTGATAAGAGCGGTGGCACCGGATCAAAACGGTAAAGTTGCAtgccagaaaaccaaaacaatccGTTGAAATACGCTAAAAAGCTCCGCTGCGGTGAAGTGAGAATTCTCTGAGTGACACCTTTCACCTACAGgtagtcatttgatccattgttaatataaatatttagagcagctttaaatgaatccattttttttttacaggacaATACATTAGGAATTTGTGGAACCATTGCAGTAGTCAAAGTGAAATTAGTCCAGAGCAATGGCAACTAAGACTTCCACCCAATAGAGCGTAAAATAGACTTGAACTGGTTATATCTACACCTCCAGTGTCCAGGCTAACCTTGGGCTTGTCTTGACCGAAAAGCTCCCAAGAGTTTGTGGCATAGAGGAGATGTGTGAACAgcctgtgtctctgtgcctgTTTGGTGCCCTTTCAGTATATTTCAAAACCGTAATAATCATGTTAAAGTGAAGGCCTTTATTTGTTCAGTCCCTGTGTGACGTAGATTATGGAAAATATCACAATGTCgtgcattatttttgtttttgtatgtttgcTTACATTATGACCTTAATGTTGAACGAAACCGCATGCCTCACTACGGTGTCAAATCTCTCCTGTCGCCTCTGTCCATCACATGACTCAGCGTTAACTCTTCACACAAAGCAAAGACAAGAGGTGCAATACTTTTCTGAGGGttggtttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagttccAGTGTAAGAATACTTGAGATGGGTCCGACGTGCGGACCAGAAGCCTGAAAGCAATAAGTGTCGATTTGTGACTGTGACGAGGTCTCCATCCTCAGAGCTGAATAAAGTGCAATATGAAATAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00963 UGP2, galU, galF; UTP--glucose-1-phosphate uridylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261368 lncRNA upstream 373726 8369378 ~ 8377699 (+) True G192464
TU261307 lncRNA upstream 622062 8126718 ~ 8129363 (+) True LOC120548141
XR_005637145.1 lncRNA upstream 622064 8126999 ~ 8129361 (+) False LOC120548141
TU261312 lncRNA upstream 625432 8124918 ~ 8125993 (+) True G192413
TU261305 lncRNA upstream 650272 8075930 ~ 8101153 (+) True bean1
TU261457 lncRNA downstream 62399 8857991 ~ 8904877 (+) True G192530
TU261455 lncRNA downstream 83566 8879158 ~ 8904877 (+) False G192530
XR_005637142.1 lncRNA downstream 181612 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA downstream 181612 8977204 ~ 9058418 (+) False LOC120548135
XR_005637144.1 lncRNA downstream 181612 8977204 ~ 9058418 (+) False LOC120548135
XM_039783417.1 mRNA upstream 2515 8743007 ~ 8748910 (+) True mdh1ab
XM_039783409.1 mRNA upstream 98253 8645881 ~ 8653172 (+) True otx1
XM_039783402.1 mRNA upstream 109638 8481426 ~ 8641787 (+) False ehbp1
XM_039783727.1 mRNA downstream 97754 8893346 ~ 8915696 (+) True LOC120547907
XM_039783726.1 mRNA downstream 97774 8893366 ~ 8899302 (+) False LOC120547907
XM_039783725.1 mRNA downstream 114073 8909665 ~ 8912332 (+) True LOC120547906
XM_039784353.1 mRNA downstream 121833 8917425 ~ 8927490 (+) False aftphb
XM_039784351.1 mRNA downstream 121835 8917427 ~ 8927489 (+) True aftphb
unassigned_transcript_1115 other upstream 800237 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 1946873 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2245606 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2250330 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 2390434 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 810933 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 1519354 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 1645935 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1791186 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1791230 10586822 ~ 10591159 (+) False mrpl57

Expression Profile