RNA id: XM_039783725.1


Basic Information

Item Value
RNA id XM_039783725.1
length 1803
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120547906
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8909665 ~ 8912332 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCTTCGAATGTTACCAACTGTCCTGTGGGAGGGAGCAATGTGGGCCGCAAGCCACCTAGTCTACCGGaattcagaagaagaagaagcatttCCACAactttacttcttccaaccgcTTCCAACGGGCCGTAAACGCAACACCGAATTTCTTCTTTGTGGGATCTCACATGTGCCGCCGCCAACCTCCGGCAGCGGTTTTTATGATCGCCACAGAGCCTTCAACACCTGACTGTGTCCCTCTAATACCCTCCGTCATGTCAGAGTCGCTGCGGGGCTTTGTCACTGAGCGGCTCGCGGTGGCAGCACAGGAGATTTTGGGTTTGGTGGAGAAAACGATCGCTGACTACCGGGAAGAGGTTTTTCGGTCAAAGAGAGAGATCCTGCAGCTGCGCAGACAGCTGGACGAGAGGAGATCCGAAAGCATCGCTGCTGCAGATGGACCCAAAGTGTCAGAAGAGATGTTTCCCCCTCAGCAGGAGTGGAATCCCAACACGGAGCCGCAGCAGAGCCAAGATCTATTTTTCCAGCAGatcaaagaggaaaaaatggagCTCACAGCGACGCTGGAGGCCGCTCCCTCCCACTGTGTGCAACAACTTTATAGTAATACAGAAGGAACTGCCAACTGCCAGGACTCTTCATCACAATACTCTGTTGCCGCACGTGTAaataaagaagaggaagagtggAAGCTAGACATGACTGCAAACTGCCAGGACTCTGCATCAGAATACTCTGCTGCAcatttagataaagaagaagagTGGAAGCTAGACATGACAGCTAACTGCCAGGACTCTTCATCAAACTactctgctgctgcacatgtaaatgaagaagaagaagaagacgaagaagaagaagaagaagagtggaAGCTAGACATGACTCCAGCTCACAACAGTCATGAAGCCTCCTGTCAGGCTGCCTCTGTTTCTCCAGAGTACCTTGGCTCACAGGAAGTGCCCAGTGATAGTGTCTGCAACTTCTGTGGAGACATATTTGAGACCAAAGAAATTTTATCAGATCACTTACAATCTCACGCTGAAGTCAAGTTCTGTCACATTTGTTGTGCTTGCTTTCTAAAGGATGTTGACCTCATAAGACACGTGGGTGAGAGCCACCCCGGAGAGAAGCCTTTTAAGTGCAACGAATGCGGAAAGGCGTTCCTGCGTAAAGACTACCTTGTGGTGCACCTGCGGACCCACACGGGAGAGAAACCTTACAAGTGTCCGTTCTGTGGCAAATCTTTCGCCCAGAGAACCTACCTGTGTGTTCATCAGAGGATCCACACTGGCGAAAAACCCTATGGTTGCAGGGTCTGCGGAAAACGTTTTGGCAGCAGCACAGCAGCGAGACATTGTGTGAAATATCATAGAGCTAACGCAGTAAACAGCTAAAGAGTTACTAGTAAGTCTACTGTGCAGGCACATATTGGAAAATGAGGAAATTGTTTGGCAAACGGCAATTTGATGAGAGTTCAATACAAAACaagttgtctttttttaaaagtgtgtaAATTAAAAGTCACATAGTAGAAGTGTGCCAGCTGACTCTAAGGTCTCTTTAGTGCagactgtatgttttttttttgtaaaggaaATTGTACTGGGTTAGCTAGAGGTTGCCCCTTAAAGGAGCAGAGTTAATGGCTTTAGTACATTCGCTAAAaatcagggttagggttacttgGCCTATGTTATCGCTGCTGCTACGTTAAATCGATATTTCACtatattttgttgcattttcTTTCGTTTATTAATCACTTACAttgtaataaaacatatttttcactTCA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03410 Base excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261457 lncRNA upstream 4788 8857991 ~ 8904877 (+) True G192530
TU261455 lncRNA upstream 4788 8879158 ~ 8904877 (+) False G192530
TU261368 lncRNA upstream 531966 8369378 ~ 8377699 (+) True G192464
TU261307 lncRNA upstream 780302 8126718 ~ 8129363 (+) True LOC120548141
XR_005637145.1 lncRNA upstream 780304 8126999 ~ 8129361 (+) False LOC120548141
XR_005637142.1 lncRNA downstream 64872 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA downstream 64872 8977204 ~ 9058418 (+) False LOC120548135
XR_005637144.1 lncRNA downstream 64872 8977204 ~ 9058418 (+) False LOC120548135
TU261508 lncRNA downstream 277686 9190018 ~ 9195416 (+) False meis1b
TU261618 lncRNA downstream 485216 9397548 ~ 9419324 (+) True G192633
XM_039783726.1 mRNA upstream 10363 8893366 ~ 8899302 (+) False LOC120547907
XM_039783416.1 mRNA upstream 114073 8750738 ~ 8795592 (+) False ugp2b
XM_039783415.1 mRNA upstream 114073 8751425 ~ 8795592 (+) True ugp2b
XM_039783417.1 mRNA upstream 160755 8743007 ~ 8748910 (+) True mdh1ab
XM_039783409.1 mRNA upstream 256493 8645881 ~ 8653172 (+) True otx1
XM_039784353.1 mRNA downstream 5093 8917425 ~ 8927490 (+) False aftphb
XM_039784351.1 mRNA downstream 5095 8917427 ~ 8927489 (+) True aftphb
XM_039784352.1 mRNA downstream 5096 8917428 ~ 8927489 (+) False aftphb
XM_039784166.1 mRNA downstream 18215 8930547 ~ 8948105 (+) True LOC120548133
XM_039784170.1 mRNA downstream 202324 9114656 ~ 9194392 (+) True meis1b
unassigned_transcript_1115 other upstream 958477 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2105113 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2403846 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2408570 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 2548674 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 694193 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 1402614 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 1529195 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1674446 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1674490 10586822 ~ 10591159 (+) False mrpl57

Expression Profile