RNA id: XM_039783772.1


Basic Information

Item Value
RNA id XM_039783772.1
length 1036
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120547944
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4487507 ~ 4511812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTAGACTTTTTGGATGCAGAGGACAAAACATCAGACATTGGTGTAGGGAACTCATTCagtgtcttcagctgtcaaAGGTTTCACTCTGAAGAATGGGAGAGGTCAACGTTAACAACACATCACTGGACATGAGCCATGATTACAACAACACCTTCAACGACCCTgagtttgaaaaaataaaattcatcaAGTATGTGATGATATGCATAATCAGCTGTATTGGAATTCCTTTGACCCTCGTGGCCATCTATGCTCTTTATTCTCTGGTGCGAAAGGATCATGTTGCTCCAATCTACGTCATCAACCTTCTCATTTCTGACCTCATTCAGTTCTGCTGCATGATCGGTCGTGTGGCACCACGTGAGGACGAGAATACAGCTAGAATTATCAGTTCTATCTACAACTCTAGTCTGTTTGCCAGTGTTTGCTTCATGCTGTGCATCGCCCTGGAAAGgtatttggtcatcGCCTGCCCACTGTGGTACCGCTTCAGACGATCCATCAAGATCTCTGTGGTTGTCTGTGTTCTGGTTTGGATCATTTCTCTTGCCATTGGCTCCACTTTTGTATTTGGGTATTTTTCAGAAATCCCAGTAACCATCTTAGCCATATTTTTCCTCCTTCCCCTCCCACTGCTCATATTCTTTCTGGTTGGGACCCTTAAAGCCCTGTCTGCTTCCATCTCAGTTCAAGCTGATGAAAAACGTCGAATTGTGGCAATGTTGGTCCTGGTGCTGCTTATTTACATGCTGCTGTTCCTGCCCAGAATCATCAGGTTTCACAGATATGACATGACCCTCTACATTCTGTCTTATGTGTTTATTAAGTTGAGTCCTCTTGCAGACTTAGTTCTGTATGTTTTCTTGAGGAAAGGGGCCATAGACAAGCTTTTGGCCTCTGTCTGTTGTTGCAGAATGGACAGCAATGATGTCAGCAGTTCAACAGTATGAATGATGACAACATGTCCACAGTCAGCTTCATGTagagagagagagagagagagagagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260684 lncRNA upstream 63700 4384230 ~ 4423807 (+) True G191918
TU260675 lncRNA upstream 71220 4348505 ~ 4416287 (+) False G191909
TU260678 lncRNA upstream 119531 4367675 ~ 4367976 (+) False LOC120548449
TU260674 lncRNA upstream 137865 4348505 ~ 4349642 (+) True G191909
TU260670 lncRNA upstream 139928 4343151 ~ 4347579 (+) False arfgef3
XR_005637121.1 lncRNA downstream 96330 4608142 ~ 4609045 (+) True LOC120547946
TU260712 lncRNA downstream 96347 4608159 ~ 4609036 (+) False LOC120547946
TU260710 lncRNA downstream 117245 4629057 ~ 4678348 (+) True LOC120548511
TU260709 lncRNA downstream 117359 4629171 ~ 4636348 (+) False LOC120548511
TU260731 lncRNA downstream 210895 4722707 ~ 4760414 (+) True G191960
XM_039783769.1 mRNA upstream 25789 4458016 ~ 4461718 (+) True LOC120547940
XM_039783768.1 mRNA upstream 58835 4423327 ~ 4428672 (+) True LOC120547938
XM_039784284.1 mRNA upstream 97722 4384138 ~ 4389785 (+) True LOC120548201
XM_039784709.1 mRNA upstream 105065 4378205 ~ 4382442 (+) True LOC120548450
XM_039784708.1 mRNA upstream 119181 4367151 ~ 4368326 (+) True LOC120548449
XM_039783770.1 mRNA downstream 32800 4544612 ~ 4548774 (+) True LOC120547941
XM_039783771.1 mRNA downstream 63771 4575583 ~ 4578361 (+) True LOC120547943
XM_039783773.1 mRNA downstream 102111 4613923 ~ 4615961 (+) True LOC120547947
XM_039783775.1 mRNA downstream 102111 4613923 ~ 4615732 (+) False LOC120547947
XM_039783774.1 mRNA downstream 102889 4614701 ~ 4615961 (+) False LOC120547947
TU260668 other upstream 198863 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 204787 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1336963 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1337621 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1392085 3093984 ~ 3095422 (+) False LOC120548437
TU260824 other downstream 374564 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 1508310 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1508310 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1812703 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1812703 6324515 ~ 6360991 (+) False itsn1

Expression Profile