RNA id: XM_039783775.1


Basic Information

Item Value
RNA id XM_039783775.1
length 590
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120547947
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4613923 ~ 4615961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAAAACATCAGACATTGGTGTAGGGAACTCATTCagtgtcttcagctgtcaaAGGTTTCACTCTGAAGAATGGGAGAGGTCTATGTTAATGACACTTTACAGGACATGAGGGATTATTACAACAGCAACTTCAACgactttgaatttaaaaaaatactattcATCATAAATGTGGTGACATGCATAATCATTAGTATCGGACTTCCTTTGACCCTCGTGGCCATCTATGCTCTTTATTCTCTGGTGGGAAAGTATAATGTTGCTCCGATCTACGTCATCAACCTTCTCATTTCTGACCTcattcagttctgctgcttgatCGGTTTGGTGGCAAAATCTGAGGACCAGAAAATAACCGTTGTTATTTACTTCTCTAGTCTGTTGGCCAGTGTTTACTTCATGGTGTGCATCGCCCTGGAAAGgtatttggtcatcGCCTGCCCACTGTGGTACCGCTTCAGACGATCCATCAAGAGCTCCGTGGTGGTCTGTGTCCTGGTCTGGGTTTTTCCTCTTATCTTTTTCATCGGTTATGTATTTTGTTACTGCTGATGAAAAACGACGAATTGTGGCAATGTTGGTCCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637121.1 lncRNA upstream 4878 4608142 ~ 4609045 (+) True LOC120547946
TU260712 lncRNA upstream 4887 4608159 ~ 4609036 (+) False LOC120547946
TU260684 lncRNA upstream 190116 4384230 ~ 4423807 (+) True G191918
TU260675 lncRNA upstream 197636 4348505 ~ 4416287 (+) False G191909
TU260678 lncRNA upstream 245947 4367675 ~ 4367976 (+) False LOC120548449
TU260710 lncRNA downstream 13325 4629057 ~ 4678348 (+) True LOC120548511
TU260709 lncRNA downstream 13439 4629171 ~ 4636348 (+) False LOC120548511
TU260731 lncRNA downstream 106975 4722707 ~ 4760414 (+) True G191960
TU260737 lncRNA downstream 110842 4726574 ~ 4773778 (+) True G191962
TU260756 lncRNA downstream 213887 4829619 ~ 4830101 (+) True G191981
XM_039784721.1 mRNA upstream 12657 4503362 ~ 4601266 (+) True LOC120548456
XM_039783771.1 mRNA upstream 35562 4575583 ~ 4578361 (+) True LOC120547943
XM_039783770.1 mRNA upstream 65149 4544612 ~ 4548774 (+) True LOC120547941
XM_039783772.1 mRNA upstream 102111 4487507 ~ 4511812 (+) True LOC120547944
XM_039783769.1 mRNA upstream 152205 4458016 ~ 4461718 (+) True LOC120547940
XM_039784789.1 mRNA downstream 13419 4629151 ~ 4636525 (+) False LOC120548511
XM_039784008.1 mRNA downstream 287990 4903722 ~ 5248736 (+) True atrnl1a
XM_039784009.1 mRNA downstream 287990 4903722 ~ 5248736 (+) False atrnl1a
XM_039784010.1 mRNA downstream 287990 4903722 ~ 5248736 (+) False atrnl1a
XM_039784011.1 mRNA downstream 287990 4903722 ~ 4973557 (+) False atrnl1a
TU260668 other upstream 325279 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 331203 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1463379 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1464037 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1518501 3093984 ~ 3095422 (+) False LOC120548437
TU260824 other downstream 270644 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 1404390 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1404390 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1708783 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1708783 6324515 ~ 6360991 (+) False itsn1

Expression Profile