RNA id: XM_039783786.1


Basic Information

Item Value
RNA id XM_039783786.1
length 2043
RNA type mRNA
GC content 0.60
exon number 7
gene id znf365
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3123767 ~ 3137751 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAGTGTTGTTATTGATCAGTTGCTAACCTAACGGTCGTCCACCGTTCTGAATGAATGACATCATGCAGGCTGCTGTCGGTCTCCATCTGCGACATGACATCTCCACACACTAACGGTGTAGAGTGATGCAGCAGAAGTTGTGCTCCAGAGGTTCTGGCTCTTTCCTCTTGGAGAGGAACGGCCAGGCCTGCGGCGCCGTCACGGCCAACGCCAACACCAACGCCAACGCCACGTCCTGCGACCTCCCCTTCCGCTGCCCCCGCTGTGGCGAACAGGAGCGCTTCCGCAGCTTGGCCTCGCTGCGCGCCCATCTGGAGTACCGCCACTCGTACCGCTCGCCGGACGTGACCCCCGGCGGCTTCAGCATCACGGGCAAACTCCCCGACCCGTTGTCGGCGGCGATCCCCTGGCACGACACGAGCCTGCCGACCCGCAGGGGCCAGCAGGGCGCGTGGCGGCCGCCTCACGTCCGCTCCCTCAGTGACAGCAGAGACGGCGAGGGCCTCCGCTCGTACAGCTCCGCGAGGAGACGCACCCAGAGCGTTGGCGTCGGGACGCAggctgaagaggaggaggatgatgatgaggaggaggaggaagatgaagaggaaTTTGGGACAGAAGATGAAGAcgtgagagaagaggaggaagatgatgaacagccctacgaTGAAGgtgaagagagagatggaggtaGAAATGAGGAGGATGTCAAAAAGTCCGACAAGTGCCACCATCACCTGCCGCTCCCCCCCGCGGCTCCTCTCGGACACCCGCCAGAACCGGACCCGGATGTAGACCTGGACCTGGTCGAGCAGAGCTCGTACTCGGGTCTGGAGACGGCGGCGGCCTCGGCCGCGGTGCGGCGGCGGCTGGCCAGAATCCTGCGGGCGGCCGACAGCACCATGCAGCGCCGGCTGGCCAAGGTGAGCACGGAGCTCGCCCAGACGGACACGGAGCTCCTGTGCGAGCGCGCTCACTCGCAGCACCTGGCACAAGAGAGGCAGGAGGTCGCCGACCGGGAGCGTTCGCTGAGCCGGCAGGTGGACGTGGCCGTCATGGTGATCGCCGCGCTCAGGGAGCAGCTCAACGCCTCGGAGAACGAGCTGGAACGACGGGAGAGGGAGGTGCTGACCATCCAGAAGTTCCTGGAAGCGGCGGCTCGACAGGAGACGTGCGGTAAAGTTCGAATCCAGCGCTTCATCGAGAATCTGCTGCGACGCATCGCTCTGGCCGAGAGACTGGTGGAGTATTACCAGGGCAACGGCAGCCCGCAGCAGTGCAACCACTACAAGTACCAGCAGCCAACTGATAACGGACCTCGCAGAATCACTAAAAGCAGGTCAGCAGGAGGTCAGCTGTCCTCGTCTGGTCTCCACGACAGCAGAAGTCACTCCTCCTCGCAGTTCGGCGGCTGTCCTCTGTTCTCCaaacccagcagcagcagcagcgccggcGAGCGAGACCGCGAGCGGGAGCACCGGGAGCGTCTGGCGCAGTCGTCCCGGCTGTTCTGCCGACCCGAACACAGAGACGACATCTGGAACCACCAGCGGCGCCGCTCCGCCGGGTACGAGGCGTAGAAGCTGTAGAGAAACACCGGgcggggggagaggggggtgtCAGAGGGTAAAACTCTATTATCTAACGATGACTTTATTCCAGTGTGTTAACCTATGGAAAAGTACAGCACGGTCACTTTCACGTCAAGCTTCTTTTGGAGCAGTTTATGCCGAAGTGATTCCTCCTTCAGTATCGTTTTTTTCATTAGCTTTGCATTGccacaccttcctccacagcgctgcggaggaaggtctggctagtccacacagcattcctttGGTGGCCACGCGAGATTTCTCAGTAGGAAATGACTCGAGCAGAAACAgcaaataataatgataatttcGATGGGGCGACCTCTGGGTCACCCAGTAGGagtcatagacagtaaaagaactggaccaccagaccccgtgtctctggaccagagaccagtgaaggatgttagaagtctctttcccggtgctggctgagcgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260277 lncRNA upstream 67531 3055902 ~ 3056236 (+) True G191617
TU260191 lncRNA upstream 105319 2999740 ~ 3018448 (+) False G191571
TU260177 lncRNA upstream 123132 2999740 ~ 3000635 (+) False G191571
TU260265 lncRNA downstream 4306 3142057 ~ 3146849 (+) True G191610
TU260248 lncRNA downstream 26073 3163824 ~ 3276062 (+) False LOC120547552
TU260238 lncRNA downstream 58043 3195794 ~ 3258079 (+) False LOC120547552
TU260254 lncRNA downstream 73505 3211256 ~ 3258079 (+) False LOC120547552
TU260243 lncRNA downstream 73710 3211461 ~ 3258079 (+) True LOC120547552
XM_039784697.1 mRNA upstream 12809 3093967 ~ 3110958 (+) True LOC120548437
XM_039784458.1 mRNA upstream 294019 2829059 ~ 2829748 (+) True LOC120548310
XM_039784452.1 mRNA upstream 460089 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 486491 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 615386 2504767 ~ 2508381 (+) True rps27a
XM_039784298.1 mRNA downstream 35854 3173605 ~ 3176172 (+) True adob
XM_039783652.1 mRNA downstream 77493 3215244 ~ 3250866 (+) True kif11
XM_039784698.1 mRNA downstream 117699 3255450 ~ 3256441 (+) True LOC120548438
XM_039783654.1 mRNA downstream 122971 3260722 ~ 3268081 (+) True LOC120547879
XM_039783653.1 mRNA downstream 125747 3263498 ~ 3268081 (+) True LOC120547878
TU260292 other upstream 28345 3093984 ~ 3095422 (+) False LOC120548437
TU260181 other upstream 202043 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 345400 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 357705 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 362088 2756154 ~ 2761679 (+) True G191565
unassigned_transcript_1108 other downstream 12063 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 12722 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1134222 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1150146 4287897 ~ 4288644 (+) True G191903
TU260824 other downstream 1748625 4886376 ~ 4887023 (+) True G192040

Expression Profile