RNA id: XM_039783873.1


Basic Information

Item Value
RNA id XM_039783873.1
length 5416
RNA type mRNA
GC content 0.46
exon number 16
gene id cdh11
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 7693588 ~ 7790218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCGAGGCTCTTGGAGAGAGGACGGATAAACGGCGCTGACGGTAGACTACCGGATTTGATAACCTAAGGAGGGAGGGATGCTACGGTGATtcccctcttttctctcccaACACCCAAAACCTCCTCACCACTCCTGTTCATCACTTCAATCTCGGAACGTTATCAAGACGCACTACTGCTCTGTCtatcatattttgttttttgtatccATATTTTAACCCGCTTGGTTGGTTGGTTTGGTATTGTCTTGCCTCTGCGCTCCAGCAGGATAAAATATAGGAGAAAGaacatttggttttttttttaccccctcTTCtccaagcgcacacacacagacaaaaactgGGTTTTAAATCAGTGGATGTGTTGGACATCTGATGAAAGAAGCAATCATTGTTGACAGAAGTGATCGTTTTCGACCGGCTTGTATGTATTGGAGGAATTTCCTTGGAGAGACGGGCTGCGCACGGAGTTTCTCACTTCCAAGCAGATCTGTGTCGCCGTGCAGAGGAGAAAACCCCCAACGTATCCCACACCAGTAATGAGGTAAAGGCTCTGTGaccagaggagagagggagttgACCAATTGTGAGAAAAGAAGAACGAGAAGAAAGGCAGTAACGTGGAAGTGGGTGATGAGTAGCCGCACCAACAGGCCCCTTCTCAGCTAATGAACTAGGAAGTTCATCAACAACATTTTGTTAGCAAAAACAGGATATCACCTCAGTGGGAGCGGAGCTCCACTGAGAGCAACCAGAAAGTAGGGGCGGAGTGAAGAGCAACCGCTCAGGTTGGGCAAGATGGCGATACCGACGATGAAGCGGAACGGCCTTGGGCCGCTGAGGGCCTTCCTGGTGCTGGTGGGAGTTTCTGCACTCTGTAGCGTTGCATTAGGAACCCGGAAAGGAAATGCTTCTTTGGATCAAAGGggccacagacacagacatccAGGTCACTTGTCGCtgcatagacacagacagagggcAGGGAAGGAGGGGCAGGTACTCCACAGGTCCAAACGAGGATGGGTCTGGAATCAGTTCTTTGTCATTGAGGAGTACACTGGGCCTGACCCAGTTCTGGTGGGCAGGCTCCACTCAGACGTAGACTCGGGCATTGGCAACATCAAGTATATCCTGTCCGGTGAAGGTGCGGGAACGATCTTTGTTATCGATGACAAGACGGGCAACATCCACGCTACAAAAACCCTGGACCGTGAAGAGCAGGCCCAGTACACTTTAACAGCCCAGGCCGTGGACAGGGACACTAATAAGCCTTTGGAGCCTCCATCAGAGTTCATAGTGAAAGTTCAGGACATCAACGATAATCCTCCTGAGTTTCTACATGGGCCGTACTATGCCAGGGTGCCGGAGATGTCAAATGTTGGTACGTCAGTGATGCAGGTGACAGCTACAGACGCTGATGACCCCACCTACGGCAACAGTGCCAGGCTGGTGTACAGCATCCTGCAAGGACAACCGTATTTCTCTGTGGAGCCTCAGACAGGTATAATTCGTACAGCCTTGCCAAACATGGACCGTGAGGCACGGCAGGAGTATGATGTCGTCATCCAGGCCAAAGACATGGGTGGTCACATGGGTGGGCTGTCGGGGACCACCGAGGTTAAAATCACCCTCACAGATGTCAATGACAACCCTCCAAAATTTCCACAGAGTGTGTATTCCATGTCTGTATCAGAGGATAAAGTGCCAGGAGAGGAAGTGGGCCGTCTTAAGGCCAAAGACCCTGACCTTGGAGACAACGGGATGGTGAACTACCGCTTATTGGACGGAGATGGACTGGCCATGTTTGAACTGAGAACTGACTCTGAGACCAGAGAGGCTGTTATTAAACTGAAGAAGCCAGTGGACTTTGAGACTAAACGGTCGTACACTTTGAAGGTGGAGGGATCCAACCCTCATGTTGACCCTCAATACCTCGCTTGGGGGCCTTATAAGGACGAAGCCACAATAAAGatatcAGTGGAGGATGCAGATGAGCCTCCTGTGTTTGTAGATCCCAGTTACACTTTTGAGGTGGAGGAGAATGCGCCGGAAGGCACCCTGGTGGGACGAGTCCACGCCAAGGACACTGATGTTGCCAACAATCCCGTCAGGTACATGATCCCTCTGTACACAGATATAGAGCAGTTCTTTAGCATAAACGCAGAGGACGGCAAGATCACCACGACAAGACCACTGGACAGAGAAGCACAGCCCTGGCATAATATATCTGTGTCAGCCACAGAGATAGgaggccACCACCAAGACACCAAAGTGCGTGTTAACATTAAAGTGAAAGATGTAAATGACAACTCCCCAGAGTTCGCCACCAACAACGAAGTCCTCATGTGTGAAAATGTGGCGCCAGGGAAGGTTATTGAAACCGTAAGTGCAGTGGACAAAGATGAGATGGCTCACAGACAACACTTCACGTTCAGCCTCGCTCCAGAAGTCACCCACAACCACAACTTCTCCCTCAAAGACAACAGAGACAGCACAGCCAGTATCTATGTGCTCCGTAAAGGATTCAGCCGTCTGACCCAGGATGTTTACTACCTTCCCATTGAGATAAACGACAACGGTTTCCCCGCTATGAGCAGCACCAACACCCTGACCATCAGAGTCTGTTCCTGTGACAGCAGAGACACCATCCTCTCCTGCAACGTGGAGCCCTACGTCCTACCCGCTGGTCTCAGCACAGGGGCGCTAATAGCTATCCTGGCTTGTATTGTCATTCTGCTGGCAATAGTGGTGTTGTTTGTTGCACTGAGGCGTCAGAAGAAGGAGCCATTGATAGTTTTTGAGGAAGAGGACATCAGGGAGAATATAATCACGTACGATGACGAGGGAGGTGGTGAGGAGGACACGGAGGCTTTCGACATCGCTACGCTGCAGAACCCAGATGGTGCCAACGGTTTCCTGCCAAGAAAGGACATCAAACCAGAGCTTCAATATCCCATGAGGCCTGGCGCTGGCCGTCCGGCAGCCAACAGTGTCGATGTTGATGACTTCATCAAGACTCGAATTGCAGAGGCTGACAGCGACCCGACTGCACCTCCTTACGACTCCATTCAGATCTACGGATACGAAGGCAGAGGATCATTGGCTGGGTCACTGAGTTCCCTCGAGTCTGTCACAACAGAGTCTGACTTGGATTATGACTATCTGCAGAGTTGGGGGCCAAGGTTTAAGAAGCTGGCAGATCTGTACGGAACCAAAGACTGCTTCATTAACGATGGTGATGATGGGGAAGACTCTTAACAGTGGTCGCACTGATTGGACGCCCCCCGATTTATGGATTCCATGAGGATTTGTTAACTGAGGCTAACACTCCCCAGTGTCAATTGTTATCAACTACAACCTGATCAGTTTATGCCAATGTGCAACGGACGTTAACAGCTCTCCCTTTCACAGCGCCTCCCTGGTCCTCCAAGACTATTTGTTAACGAACACATAATGAACGCCCAGTATTTCCaaaatctctctcttttcccgCCTACAGTACGTCTCCTTCCCTTTCTTTTTCTACAGACTTGAGCATTTCAGGGCTAGGAGATTTGTTAGGCCACAAGTTTGTCAGTTTGAAAGTAAATTGTTGGGAAAAAAATGTCGCTGTGTGATCAAAATAACTTGCTTATAGCGAACTGTTTAGTTTCTTAGAGGTTCTATATACTTTTGTGGACCAGATTCACGTACTTCCTCAACGGTTCCTGAGTGGGGTATATTCCCTTAGTTGCTCTCTTTGTGATGTATGTAAAAGACACATGGAAAGACCGGAAGAGAAAGATACAAactaattaaaagaaaaagttagTCTGGGATGCAGCAACTGTCTGATGTTACGGAAGGGAAATAAAAGGGGTCAAACAgttgaaacaaaacattttttttttctccaatgttGTGTTCAAAATTCAGCAGTTACTGTGGTATCGATAGCGTGACAGACTCTGGGTTGTTGATACTTTGAAGACGCTCACAGCATCTTCACAGTATGGTGGccttataataaataaacaacaactCCAGGGGTGAACACAACAGGAGTAACGATAGAGACTGCTAGCTTCAGTAgctacacacagacaaatgatCCTACAAGGACTGGGTATCTGTGAAAATGCTACACCAATAACTTTTTTCTAGTCCCAAAACAACATGGATTCAATTGAAAAACTGTGGACGATTCTTTGTTTTCATTCTTCACTGCAGAGAAGACGCGAAAAGAAAAGCTTCCCCTCGCCACGCCCCTGTGTCCCCATTCCTCCTATCAACAATCACTTCCCATACCGAGTCCACCGACGAATGATCACTTTCCTCATTCAGAGTCCACCAATGATGATCAATCACAATGAGTAAAAACCTGTGAGCTCTAAAGATCGCCTTAAACTTAAATGGACACTCTTGCAACGCAGtgcattctctttttttttctccttttgtttctttttgtaaCTTGAAAAGTATATTCAGAAAGCAAACTATTCTCCATGATAGGTATGTACAGAGCAATGTGCAGACATGTGATATATCACTGAGGATCCAACTTGCGCCTGGTGCACTCTTTAAATAGGATGTGCAGTTTCTGCCAGCATGGAAAATGTAGACCGTGAAaatgtgcattgtgttttttttccccccaacacCAGCTATGTTGGCAGCAACACGTGTTGTATCAACACGTGTTGCTATTCAAACATAAAATGTGCACACTGGAAAATAACACAAGGTGTCTTTTCGGAGCAACATATACAGAGAGGCTGAAAGCAGAACATCCTTTTTAAGTGTGTAGGTTCTTGTTCAATCTCTTTttaatgttatattattattattattgttgttttttattattattattattatcatcatcattattatgaCAATAATTGTCTTTCTTTGGCTGCAGCTACACAGGAACACATTCATGTTTAACTCTTTGCAGCTCAGATTATGGTTGTCTAAACATGCAGAACTACGtagtatttcattttcatttttggacAGCTATAAGAAAACTACTGCCAAAAGTTAAATATCCGCTTTGGTTTATTGCCTGTGTGAATACAACctctcgctttttttttttttcattatttggcGTTTCTTAGTTCCTTCTCCCTGTTTAAGAGGAAAACTAGCAATCTGTTGCAGTGAGAGAACGCCTCGTTTTTATTCTCTGTCAAGTTTTATGGTACCAATTTGTACAATTTTAAAAGTTCTTATTTTAGTATACATGCAGAATATTCCAGTAttacaacaaaaaacatgttaagAAGATacgatttaaaaacaaatgttacagcATCACACTTATATTTTCTGAACATTGTAATGTTGCTTTACTATGTGCTTCAATCTCCGAAgcgaaaaaaaactttgaaataaatgctctttttataaaatgatattGAA

Function

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06803 CDH11; cadherin 11, type 2, OB-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261217 lncRNA upstream 474564 7128852 ~ 7219024 (+) True G192333
TU261213 lncRNA upstream 570410 7122200 ~ 7123178 (+) True G192329
TU261154 lncRNA upstream 758910 6871964 ~ 6934678 (+) False G192282
TU261156 lncRNA upstream 819371 6834017 ~ 6874217 (+) True G192282
TU261158 lncRNA upstream 830777 6860326 ~ 6862811 (+) True G192283
TU261246 lncRNA downstream 45205 7835423 ~ 7835707 (+) True G192359
TU261262 lncRNA downstream 116352 7906570 ~ 7906940 (+) True G192375
TU261268 lncRNA downstream 117545 7907763 ~ 7913357 (+) False G192381
TU261269 lncRNA downstream 117545 7907763 ~ 7952125 (+) True G192381
TU261311 lncRNA downstream 283563 8073781 ~ 8074959 (+) True G192412
XM_039784230.1 mRNA upstream 833402 6842493 ~ 6860186 (+) True supt3h
XM_039784231.1 mRNA upstream 833402 6849195 ~ 6860186 (+) False supt3h
XM_039783135.1 mRNA upstream 855598 6829571 ~ 6837990 (+) True LOC120547615
XM_039783136.1 mRNA upstream 855600 6829571 ~ 6837988 (+) False LOC120547615
XM_039783390.1 mRNA upstream 889831 6800514 ~ 6803757 (+) False LOC120547751
XM_039783877.1 mRNA downstream 97770 7887988 ~ 7905745 (+) False chrna1
XM_039783878.1 mRNA downstream 106935 7897153 ~ 7905745 (+) True chrna1
XM_039783818.1 mRNA downstream 142907 7933125 ~ 7938496 (+) True LOC120547970
XM_039783820.1 mRNA downstream 152491 7942709 ~ 7947821 (+) True LOC120547971
XM_039784379.1 mRNA downstream 177154 7967372 ~ 7970313 (+) True LOC120548260
TU261142 other upstream 889036 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 1187769 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 1192493 6485631 ~ 6501095 (+) False LOC120548025
XR_005637124.1 other upstream 1332597 6324515 ~ 6360991 (+) False itsn1
unassigned_transcript_1115 other downstream 160899 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 1816307 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 2524728 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 2651309 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 2796560 10586778 ~ 10589051 (+) False mrpl57

Expression Profile