RNA id: XR_005637125.1


Basic Information

Item Value
RNA id XR_005637125.1
length 4456
RNA type transcript
GC content 0.56
exon number 33
gene id itsn1
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6324515 ~ 6360991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCATTTTCCAGCTGTCCCTCAGTCGGTCGGGATTTCGGAACCACAGGAGAATCACCGGAAAGGGTTTAGTGGTAAAACAGCACATTCGAGAGGGAATACAACATTATATGGTAACATAAACACGCAACGAGCTACGTTATCCTGAATTACACGATGGAAACTGAACTATGAGGTGTTGTGTAGTGCAGACGACTGAGTGAACCATGGCACAGTTCCCCACCACATTCCCagGTCCAGATGTGTTTCTAATCTCAGTGGATGAGAGAGCCAAACATGATCAGCAGTTTCTCAGCCTCTCTCCGACTGCCGGGGGTTACATTACAgGCGACCAAGCCAGGAACTTCTTCCTTCAATCAGGTCTGCCCCCTCCCATCCTGGCTCAAATCTGGGCTCTGGCTGATATGAACAGTGACGGTCGCATGGACATCCACGAGTTCTCCATCGCCATGAAACTCATCAAGCTGAAACTCCAGGGTCACCCTCTGCCCCCCGCTCTTCCTCCCAGTATGAAACAACCCGCACTGACTTTACCCCCACAGAGTGGCTTTGGCATGCCGCCCATGCCTCCCATCTCGGCTCCTCTGTCAGGCGTGCCTCCACTCCCCCTGCCACCTCTCCCTGTCGGAGTGTCTCCCCCACTCGTCTCGTCTGCCGCGCCTCCCCTCCCCCCGCCCCTCGCCAACGGAGCTCCTCCCACAGGCATAATGCAGCCAATCTCAGGCTTCTCCCACCCAGCTCCCTCTGTCAACAAGTCTTCTTCGTTTAATCGTTCCAGTACCAAGTTGCAGAAGGGGCCGTCCGTGGATATTGCTAGTGTTCAGCCCCCGCCTGATTGGGCTGTTCCTCAGTCCTCCAGGCTGAAGTACAGACAGCTTTTTAACTCCCATGACAAGATGATGAGTGGACACCTCACAGGTCCCCAGGCTCGCACTATCCTGATGCAGTCCAGTCTTCCTCAGGGACAGCTGGCCACGATATGgAGTCTATCAGATATCGACCAGGATGGAAAGCTAACAGCTGAGGAATTTATCTTAGCCATGCACCTCATAGATATGGCTATGTCAGGGCTACCGCTCCCCCCGGTGTTACCGCCAGATTACCTCCCACCCACATTCAGGCGTGTGCGAAGTGACAGTGTTCAGTCGGACCAGAAGAGCGTCCAGGAGGAGTTAGAGGAGGAGGCGGAGAGCAGCCAGGACAAGAAATTACCAGTGACGTTTGAGGATAAGAAGAGGGAGAACTTTGAGCGAGGAAACCTGGAGTTGGAGAAGAGACGTCAGGCTCTGCAGGAGCAGCAGAGGAAAGAGCAGGAGAGGCTGGCAGCgctggagagagaggagcaggagagaaaGGAGCGTGAGCGTCTGGAGAATGAGAGGAGACGACAACACGAACTCGAAAGACAactggagagacagagagagctggagaggcagagagaagaggagagacgcaaagagatagagaggagagagGCTGCTAAGCGTGAATTAGAGCGCCAGCGTCAGTTGGAGTGGGAGCGTCAGCGTCGCCAGGAGCTTCTGACTCAAAGAAACCGAGAGCAGGAGAGTATCGTGCTGCTCAAAGCCAGGAAGAAGACCCTGGAGTTTGAACTGGAGGCTCTGAATGATAAGAAGTCCCAATTGGAGGGCAAGCTGAAGGATGTTCGGTTTCGTCTGTCAGCTCAGCGGAGAGAGGTGGAGCAGACCAATCAGACCAGAGAAACGCGCATTGCTGAAATCACCCTGCtacaacagcagctgcagGACTCCCAGCAGTGGTTGGGGAGGCTAATTCCTGATAAACAGAGTCTCAATGACCAGCTGAAACAGGTTCAACAGAACAGTCTGCATCGTGACAGTCTATCGTCCCTGCAAAAGGCTGTGGAGCAGAAGGAGACCAGCAGACAGCAGCTCAGAGAACAGCTGGATgctgtggagagagagacaagggcCAAACTGCTGGAAATAGACGCTTTCAACACCCAGCTGAAGTCTCTGTGTGAGTTCTATGCCAACCACTGTGCCAGGATAGAAGCCCTGCGACGCCAGCTTCACGAggaacagagagggagacagGAGCTGAGGGAAATCCACAGCCGGCagcagaggcagagacagagggagctGGAAGGAGACACacccacactgacacacacacaccctcacttACACACCCCGATCGAGAGGAAGTCTGCTGAACTACAGGACAGCAGgTTGTCATCGGAGGAAGCCGTGGCCTGGAGGGATGAAGCAGCCAGCTCCGCCCCCAGCGCTCCTagccctccctccatctctgtaCCACATGCCTGGCTAAACAGAGTGActcaggaagaggaggagaggaagaggagaggggtggaggaggaagaggaggaggaggagggccagAAAGGGGCAGGATCAGCAGAAGAGAAGGAGGATGAGGGGAGAGGCAAGAAGGACATGCAGGAGAAACTGAGCAAGCTGTTCAGCCAGCCGGCCGACCCCTGGGCCTCAACAGTAGAGAAGGCTCCGGTACCCAGTCTGTTTGACCAGAAGGCACCAGTCACTAGCTTTGACCAGCATCAGCAGCCAGTGAAGGTGGTCTACTACAGGGCTCTATATCCATTTGATGCTCGCAGCCATGATGAGATTAGTATCGCTCCCGGAGATGTAATCATGGTGAAGGGGGAATGGGTGGATGAATCCCAAACAGGTGAACCCGGTTGGCTGGGAGGAGAGCTGAGGGGCCGTACCGGCTGGTTCCCAGCTAATTACGCTGAACGGATACCCGACAGTGAAGCACCAATCAGCCTGCGTGCTACAGCCTCAGCCACACCCCCGTCAGCCAAGCAGCCGTTATCCACGCCTCCCCCCGCACCTGGACAGACCTCCTCCTCCACGTCCTCCGCCAACAGTAACTGGGCTGACTTCAGCACCACGTGGCCCACCAACACAGCCAGTCAGTCAGACAGCGAGGGATGGGACGCGTGGCCGACCTCTTCAACCAGTCAGAATCCTTCGCTCAGTGTTCCCTCAGCGCAGCTACGGCAACGCTCTGCCTTCACACCTGCTACCCTCAGGACGggctcctctccttctcctgtgcTGGGACAGGGGGAGAAGGTCGAGGGTCTCCAGGCTCAGGCCTTGTATCCCTGGAGAGCGAAGAAGGACAACCACCTCAACTTCAACAAAAATGAGATAATAACCGTGTTGGAGCAGCAGGACATGTGGTGGCTAGGTGAACTGCAGACCGGACAGAGAGGCTGGTTCCCCAAAAGTTACGTCAAGCTAATCTCCGCCACCATGACGCCTCCCCCTGGTCCCACAGCACGCAGCAAAAACACTAGTGAGTCTGGAGTATCAGAAAGCCCACCCAATGGAAAACGCCCCTCCCCTTCCCCAACAAAACCTTCCGAGTCTGGAGAAGAGTACGTGGCCATGTACACCTACGAGAGCAGTGAACAGGGGGACCTGAGTTTCCAGCAAGGAGACGTCGTCATGGTGACCAGGAAAGAAGGGGACTGGTGGACGGGCATGGTCGGGGGCAAGACTGGAGTCTTCCCTTCCAATTATGTCAAGCCACGAGACTCGGCCTCAGAGTCTTTCGGACCAGCAGGGAAGACGGGCAGCCTGGGAAAGAAACCAGAGATCGCTCAGGTGATCGCCCCCTACAGTGCTACCGGCGCAGAGCAGCTGACCTTAGCTCCAGGACAGCTCATCCTCATCAGAAAAAAGAACCCGGGGGGCTGGTGGGAGGgCCCGGGGGAAGAAGCGCCAGATAGGTTGGTTTCCGGCCAACtatgtgaagctgctcagtcCCAGCACCAGCAAGACGACGCCCACAGAGCCCACCCCTCCAAAACTGGCTCCTGCCAGCACAGCTGTGTGTCAGGTGATCGGCATGTACGACTACGTGGCCCAGAACGACGACGAGCTGGCCTTCCTGAAGGGTCAGGTGATCACGGTGCTCAAcaaagacgactgtgattggtggaAAGGAGAGCTCAACGGGCGGGAGGGTCTGTTTCCCAGCAACTACGTCAAACTCACCACGGATACCGACCCAAGCACGCAGTGATCATATCATTACCCAGAACCCCCCTCTCCTCAAAGCCCTCAAAGAGACCCACTAGGCCACGCCCACTAGGCCACTCAACCAATGGGACAGCAGCAAGAGGTCATGGCGACTCTTCACCAATagaagccagagagagagagagagagagagacagacagacagacagacagacagacagacagactgtaaCGTTAAAACGCCCAGTGGTGGCGAGAACTCTGTCTATGCATGGCTCTGACTGGACTTGGCCAAACTCTGTTTATCTAAGGCTCTGGCTCCAAACAGCACTGTTCAACAGGAGGGAGCTCAATAGTCAgaactcctctcctctccagctttgttcttctcttctcctcctccatcttttttttgttgttcttcttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260973 lncRNA upstream 9414 6311396 ~ 6315101 (+) True G192143
TU260938 lncRNA upstream 34244 6272922 ~ 6290271 (+) True G192125
TU260932 lncRNA upstream 37144 6268397 ~ 6287371 (+) True G192123
TU260901 lncRNA upstream 133673 6049398 ~ 6190842 (+) True G192100
TU260904 lncRNA upstream 481628 5842533 ~ 5842887 (+) True G192103
TU261053 lncRNA downstream 110548 6471539 ~ 6471881 (+) True G192203
TU261055 lncRNA downstream 110548 6471539 ~ 6471881 (+) False G192203
TU261058 lncRNA downstream 116920 6477911 ~ 6478234 (+) True G192205
TU261072 lncRNA downstream 145330 6506321 ~ 6507349 (+) True G192212
TU261074 lncRNA downstream 145330 6506321 ~ 6507284 (+) False G192212
XM_039783881.1 mRNA upstream 16316 6296247 ~ 6308199 (+) True setd4
XM_039783882.1 mRNA upstream 16316 6296247 ~ 6308199 (+) False setd4
XM_039784271.1 mRNA upstream 134202 5779189 ~ 6190313 (+) True LOC120548190
XM_039783922.1 mRNA upstream 917053 5390419 ~ 5407462 (+) False ccdc172
XM_039783895.1 mRNA downstream 7046 6368037 ~ 6377416 (+) True LOC120548010
XM_039783896.1 mRNA downstream 7046 6368037 ~ 6377416 (+) False LOC120548010
XM_039783897.1 mRNA downstream 23511 6384502 ~ 6396815 (+) True si:dkey-22n8.3
XM_039783898.1 mRNA downstream 23511 6384502 ~ 6396815 (+) False si:dkey-22n8.3
XM_039783901.1 mRNA downstream 23511 6384502 ~ 6396815 (+) False si:dkey-22n8.3
TU260824 other upstream 1437492 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 2035871 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 2041795 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 3173971 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 3174629 3149814 ~ 3149886 (+) True trnar-acg_20
TU261063 other downstream 124640 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other downstream 124640 6485631 ~ 6501095 (+) False LOC120548025
TU261142 other downstream 439533 6800524 ~ 6804552 (+) True LOC120547751
unassigned_transcript_1115 other downstream 1590126 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 3245534 9606525 ~ 9624564 (+) False ddx43

Expression Profile