RNA id: XM_039783912.1


Basic Information

Item Value
RNA id XM_039783912.1
length 7263
RNA type mRNA
GC content 0.42
exon number 12
gene id kcnh1a
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10592785 ~ 10632920 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGAGCACACCAGACAAACAGCTCCTACTAAGACATCCAAGCAGCTTCTCAGAGCCGGAGAGACCATGAAGACAAACGGAAGATCGAGGAGTAGAGATTCACCTGCAGACGACTGAGTGAAGAGGCAGGATGGCGGGGGGTCGGAGGGGACTTGTGGCCCCACAGAATACTTTTTTGGAGAATATTGTCAGACGGTCGAACGATACCAACTTTGTCCTGGGAAACGCTCAGATAGTAGACTGGCCCATCGTCTACAGCAATGATGGTTTCTGCAAGTTGTCGGGCTACCACAGAGCAGAGGTGATGCAGAAAAGCAGCACCTGCAGCTTTATGTACGGGGAGCTCACGGACAAGGACACAACGGAAAAAGTGCGACTAACATTCGAGAATTATGAGATGAACTCATTTGAAATACTGATGTACAAGAAGAACAGGACGCCTGTTTGGTTTTTTGTGAAGATTGCTCCCATTCGAAATGAACAAGAGAAAGTGGTCCTGTTTCTTTGCACGTTTAGTGACATCACAGCCTTTAAACAGCCAATTGAAGACGATTCTTCAAAAGGCTGGGGAAAGTTTGCCCGACTGACTCGAGCTCTAACAAGCAGTAGAGGAGTCTTACAACAGCTGCAGCCCACAGTTCACAAAGGAGAGAATGTCCACAAGCACTCCCGCTTAGCTGAGGTACTGCAGCTCGGCTCAGATATCCTACCTCAATACAAACAGGAGACCCCCAAAACCCCTCCCCACATCATCCTGCACTACTGCCTCTTCAAGACCACATGGGACTGGGTCATCCTCATCCTCAccttctacacagccatcatggTGCCCTACAACGTCTCCTTCAAGACGAAGCAGAACAATGTGACGTGGCTGGTGGTGGACAGCATTGTGGATGTCATCTTCCTGGTGGACATCGTTTTGAACTTCCACACCACGTTCGTCGGACCCGCCGGCGAGGTCATCTCAGACCCCAAGCTGATCCGCATGAACTACCTGAAGACCTGGTTTGTTATCGACCTGCTGTCCTGCCTGCCGTACGATGTCATCAACGCCTTCGAGAATGTAGATGAGGGGATCAGCAGTCTGTTCAGCTCACTTAAGGTGGTCAGGCTTCTCCGTCTGGGTCGGGTTGCCCGTAAACTGGATCACTACATCGAGTACGGGGCGGCTGTACTAGTCCTgctggtgtgtgtttttggacTGGCCGCTCACTGGCTGGCTTGCATTTGGTTCAGCATCGGTGATTATGAGGTTATCGATGAAGAAACAAACATCGTGCGCATGGACAGTTGGCTCTACATCCTGGCTGAGACGGCGGGCACACCGTACCGCTTCAACGTCAGTTTAGGCAAGTGGGAGGGCGGGCCCAACAAAGACTCTGTTTACATCACTTCCTTGTACTTCACCATGACCAGCCTGACGAGCATAGGCTTCGGCAACATCGCCCCTACGACAGACTGTGAGAAAATCTTTGCAGTGGCCATGATGATGATTGGATCTCTTCTTTATGCCACCATCTTTGGTAATGTGACAACAATCTTCCAGCAGATGTACGCCAACACAAATCGTTACCATGAGATGATTAACAGCGTCCGGGACTTCCTCAAGCTCTACCAGGTGCCCAAGGGCTTGAGTGAAAGAGTTATGGATTACATTGCCTCCACCTGGTCCATGTCACGGGGTATAGACACTGAAAAGGTGTTGCAGATTTGTCCAAAGGACATGAGAGCAGATATTTGTGTTCATCTTAACCGGAAGGTTTTTAAAGAGCACCCGGCGTTCCGGCTGGCCAGCGATGGGTGCCTCAGAGCGCTGGCCATGGAGTTTCAGACGATCCACTGCGCCCCTGGCGACCTGATCTACCACGCTGGTGAAAGTGTGGACAGCCTCTGTTTTGTGGTGTCTGGATCACTGGAGGTCATTCAGGATGACGAGGTGGTGGCCATTTTAGGTAAGGGAGATGTGTTTGGGGATGTTTTCTGGAAAGAAGTGACTCTCGCTCAAGCCTGCGCCAACGTCCGAGCTCTGACCTACTGCGACCTCCACGTCATTAAACGTGACGCCCTGCAGAAGGTGCTGGAGTTCTACACAGCGTTTTCCAACCACTTCTCAAGAAATCTGCTGCTTACTTACAACCTGCGAAAGAGGATCGTCTTCCGAAAGATCAGTGATGTGAAacgagaggaagaggagcggcAGCGACGTAAAAATGAAGCCCCTCTAAATTTGCCACCAGATCATCCGGTACGAAAACTCTTCCAGCGCTTTCGACAGCAGAAGGAAGCCCGCCTGGTGACCGACAAACCAGAACTAGATGACCTTGATATCGAGAAGGGCCCTATGTACGTGGACATCCCGATAACTACAACAGCCATCGCAACGACCAGCATCGTCACAGTGACGGAAAGCCCAGCAACACCCTCATCTTCAAGGCCTTCATCTTCAACATCTCCCAACTGTACTCCCTCAAACAAGGCGAAGCTGCAGGTCCCAACTCCTGTTTCTCTGGTGGGGGGCCGGGCAGCCGAACCCGTCAAAGTCAAAGGCTGGGGTCGCTTCAAGGAGTCCATGGCCAAAGCCGACAACTGGAACAAAGTGTCTAAAGCTGAATCCATGGAGACATTACCTGAACGGACCAAGGCGCATGAGTCACAGATGTCTCTAAAGAAGACAGACTCATGTGACAGCGGTATCACCAAAAGTGACCTGCGCCTGGACAAAGTGTGCGAATTCCGCATAACGCCCCAGGACCGCAGTCCCGTCCAGCCTCCAGAGACCAAGCACGCCTTCTACCCCATCCAAGAGCAAACGCTTCAGGCCTCGCTTCAGGAGCTCAAGCTGGAGCTGAAGGACGACCTCAAGAACCTGAATGTTCGAATGTCCGGCCTGGAGGCGCAACTCACAGAAGCACTTCAACTCCTCAAAGTGAGGAGAACAAGTGCTGGCTCTCCGCAGCCTCTTTTTGACATTTCTAGACCTGCTTCACCAGAACTGGACAAAGAGGACATTTTCTCTTGAAGAGTGGAAGGTTAACTGATCAGGTTAACTGTGAACTCAGATGGAATCCAGTAATATCCACATTACTTGGAGAGCTGAGTCTGCACTGGGCACACCATTTATATTAGGCAACAGTGTGGTCTTGAAGACGCACCGGTCTTTATCCTAGGGGTGTAGCGGTTGGCTAACAAGGGAATGTCATGTTGAGAAGTCGAGGTCGTAGCCCAGATTCTGTTGTTGTAACATTGAACCCTGGAAGGTTACAAAAACACTGACAGCTCTATGTTTGTACAtaagtttgatttatttttccatCACACTATGATGGAAAAATAACTTGAGCGGTTTGATTTTATCTCGATTTTGCGAGTGTCAACAGtacaatacatatataatacatagtTGTATCTCTGTTGGGAAGAGAATAGAAACAGCATGACCCACTGGTTTGTTATTGAATCATTTGTAAGAGATTCTTTGCATGTCACGTAAACTAGGCGTGTGACTCAAATTGCAGATGGtgcattttttattaattgagGCCACACAGCGACTCATTTGCATTATTTCACCATGACGGTGGGAAAAGATGGTTTGTCCAGATGTTGAAACTGTCTCAGAGTAATTTCCTCAAGCAATTGATGAACTCTTCTTTTTATATCAATTGCCAGGATTGTTATGAATAATACAACTGATAACTCAACAAGCATTCAGAGTTCAGCAGTGTGTATAATTCCTATAAACCATGGATGGGCTTGATGAAAAGGCAGCAGTGAGCAATCTATCCATTGTTTCTGATATCTAGTATTTGTTATTCTCATAAATAAAcactacaaccacacacacaatacatatattGTATGAGAGCCGTGCATTTTTAGTTTTGTTGATGCATATTTAGGTGATGCAGATGGTACTGATATTGGCTGCGCCTCTTACGTTATTTTAAAACAGTTGCAcaatatttcaaaaataaaatttatatataattaaaataaaatttcaaaGTGCAGGTTTGTTCACGTAAATGGACCTTCAATGGAACATGCTTTAGAGATGTATGTTGCCTTTAATGGACACTGAGGtacatgtttacatgtgttACCAGTTAGCATGCTTGAATTAATCGTCTGTCTTCACAAGTTAACTATTAATAAAGGAAAACGATGATGAAAATGTTAAGGCTAAGTGTTTGCAATGCAGTTCTTGCTTTGCTTTATTTGAGGCCAATATTTGGAGAAAATATCTACTTGCTAACACAAAACCCGAGAATAGACATCAGTCAACAGGAAGGAAATGTGCTTTAGAGCATTTTGTAGTAACGTTTATTCATTACAGAACCCTAATGTCCACAGAAAAAGATGCATTTAACATTAAGTAAAGCAGAGCCATGATCATCAAGCAATAAGTATGCATATTTATTTGCTACAGTAGAACTTTAAAACTAATGATTAAAACgtgactattttttttaaaccattgcAGTTTAGTAAAATCCAGAACAAATTTATTGCATGTCTTAGTCATGAGCTTTACTGGTCTGCTTCTATACAGTCTTTCACATGGCAAAAAATAGCCATCAgtctatattatttattattcataTGGAAAATTTATGTTCCCTGCATGCCTTTTCTCTTATCAAGACTAAAGACAAGCTGAGAAGGACAcagctgagagagaaaaaaacgacAGGGTTTTTCTCTCAAACACATTTTGTGGCTCCATTTCCATTAAAAATGTAGCTTGCTTAAAAATAAATGGGCATGTCATCACAAAAGTGAGAACTCCTTTGGTTTAGAGCCAGTGTTTGTGGGTCTTTATGGGTCTGCTTTCGCAAAGAGTTTTGATCTTACAGAGGGAAAAGCACTAAAATCATCTGACTATGACTTCTCTATCACAGAGAATTCATGAAGCTGCTGCTTACACACAAGTTCAGAAATCAAAAAGGAGGCTAAAAGAGGGCCGACAGTATCTGAGGAATTTAGTCACGTTTGTGAAACTCTATCTAAACATTATGTAATGATAGACACAGCCTTTatctttgacatttttaaatattaaaaagggATTACATTGATATTACACAATCACTTCTTCAGTTATTATGATTGAGACTGATGGGGAACTTAGTTCAGGCACACTGACTTGTGATAAAGACTGACAAATGTCAATTCATTATATAACGCTATTCAAAAGACTTGGTGGAGATTACCACATGACAAATCCAATAATGTTATgcagttataatgtttattgtTGTAATTGCAACCAAGctctgtgtgtttattatttgtatttattttttataaatcatcccacacacacacacacacacacacacacacctacctacaTATTAAGTATCAAGGTATTGCCGTAAATATTAATGCTGGTTAAACTCTTAAATGGAaacttatttgtgtgtgtgtggctactTTTATGACAATTGGGCGAGTTTGAGGCTCTTATTTGACTACTTGGGATCAGTCAAATCTGTCAAATTAATACATTACTAGAAGCTCAACCAAGTACACGTAAGGAGTGTGCAGCGCATAAATAGcatgcaaaaaaataatcttaagggatagtttgacatttagggaaatatgcttatttgctttcttgccgagagtgaGATGATAAATCTCATGTTTTTACGTCAACTGCGGTGATAGAGCCAGGAGTTgactagcttagcttagcttagctaaggataaagactggaagcagagcAAAACAGCCAGCCTGGCTCAAAGTTCATAAGCGCCAACCAGGTAATCTAAAGCTCATTCATTAAACCATTTTATCTCGCTTGTTTAGTCAGAAATGTAAAACCAATGAATGGTTTTACTGGGAGTTATGTGCCAGTAGGTGTTTTTGAACCTtcaacagagccaggctagctgtttccccatgcttccagtctttatgctaagcttagCTAATTGACTTCCAGCTCTAGCTCCATATAatgcagacatgagagtggcatcaatcttctcatctaactctctggaaaaaaaagtgaatgtgaAGTGAACATGTCAAACTATTAACTTTGTAGGCCAGTAAGTTTGTTTTCGAATGTTTTCCTTAGAGAGAAAAAACGTGTTGGAACTGAATTGATGTCTTTGACTTTTTCTGAACACAAACTGGTGCTGGAATAGTATGAATGACAGTTTGAGATTACACTTTGAGTCACTGTTATGTAGAGTTAAAGGTGTGAATCTTTGAATGTTACACATCAGTTTAATCACAAACTGTTTAAAACAAATTCAAacaagtattttcttttttttagctctTACTTTAAATAATACTAACAACAATGAGGTgctgtttgtcattttatttattatgtgaTTCAACCATACTAAACCTGCATggaaaataatatttattttcttcaacAGATGACAATTGAATTGTTTTCATTGAAGTTACTTACGGTGGAATATTTTCATTTCAGCCCAAATAAACTGCTGTTTCACTTCACCAGTGACATATTTGGTAACAGTTGTAAAGTATATTTTAAACTTATTTTGAATAACACAAACTATGAATcttaaactttaatttgtttttgttgaaagTACTGTATTCTTTTAGTTTCTTTACAGTTACAGTACCTAATGGGAACAGaagaattgattttttttcatattaaaaTCAGTAAGATCAAATCTGTTTCAGCTACAAATCTGACTTTGTGCCACTAATTGAATGCAGCCCGACAACAAAGATATGGCATGTGGAGGGGGTATCACCTACGCCTGTTTCAAGAGGCTGAATTTTTTACCAACACCATACATATGTGTTACTAAATGGGATGTAGATGCACTCTAAAACTTAGACAGGATTCTTGAAAGCAATATGTAGTGTCTGTGctgtaacagtgttttttttaattgctacTGAGAAGCATGCAACACTGTGCCTTCATAATATTGCCCCATGCTCCTTTTTCAGGCCTGCAGTGAGATACATCTAAATTAATCCTTTGAAACGATTTGAACACAGAAGTATTTTTGTGGTCAGCTCTAGAAAGCTGCCTAATTATaaaaacctacacacacatacagtatatatgcacACATTATATTGCAATGTTTAGATTCTtaagaaagagaaaagtttgAATTTGGTGTATGGTTTATGTAATATGCACATGCCTCTATGTTCACACACGTCAAGTGATGAGAAATGTAACTATTTCAAGCACAATGGGAACTCTTTGTTATGAACTGTGACATACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261878 lncRNA upstream 236670 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 272053 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 272053 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 300745 10264100 ~ 10292040 (+) False LOC120547507
TU261816 lncRNA upstream 354126 10236971 ~ 10238659 (+) True G192771
TU261981 lncRNA downstream 134111 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 305439 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA downstream 326294 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 385220 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 385220 11018140 ~ 11018900 (+) False G192945
XM_039783498.1 mRNA upstream 1492 10586797 ~ 10591293 (+) True mrpl57
XM_039783497.1 mRNA upstream 12840 10558561 ~ 10579945 (+) True desi2
XM_039784931.1 mRNA upstream 35094 10551492 ~ 10557691 (+) True mtrf1l
XM_039782953.1 mRNA upstream 58211 10528200 ~ 10534574 (+) True LOC120547519
XM_039782943.1 mRNA upstream 304345 10264097 ~ 10288440 (+) False LOC120547507
XM_039783183.1 mRNA downstream 48341 10681261 ~ 10691085 (+) False si:dkey-174i8.1
XM_039783182.1 mRNA downstream 51560 10684480 ~ 10691085 (+) True si:dkey-174i8.1
XM_039784052.1 mRNA downstream 68334 10701254 ~ 10765131 (+) True camk2g2
XM_039784063.1 mRNA downstream 68334 10701254 ~ 10765131 (+) False camk2g2
XM_039784060.1 mRNA downstream 68334 10701254 ~ 10765131 (+) False camk2g2
TU261925 other upstream 1626 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 3734 10586778 ~ 10589051 (+) False mrpl57
TU261928 other upstream 3869 10586822 ~ 10588916 (+) False mrpl57
TU261926 other upstream 4004 10586822 ~ 10588781 (+) False mrpl57
TU261892 other upstream 150700 10441527 ~ 10442085 (+) True G192834
TU262031 other downstream 320219 10953139 ~ 10956578 (+) False LOC120548129
TU262093 other downstream 517399 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 724120 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 732468 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 1084973 11717893 ~ 11746702 (+) False sdccag8

Expression Profile