RNA id: XM_039783927.1


Basic Information

Item Value
RNA id XM_039783927.1
length 910
RNA type mRNA
GC content 0.46
exon number 9
gene id ccdc172
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 5390419 ~ 5427836 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTAGGTACAGGGGACTAACTAGGTGTTAGATAGCTATCTAGTTAactttatatacagtagtaTCTATGCCTTTGATTCTATAGCTAGCTAGGTGGCCAGTTATTAACTGAAAATGAGTTTAGACACACTCTTTCAACAAATCCTTCTAACTGAACAACAGTTAACTGAACAGACACAAAAATTCAAAGAAGTCAAAGTAGCCATCATCAGATACAATGAGAAGATCAAGAGTGCCACTGAGAAGAATGAAAAGGCCAATGAGGAACTTGATACAAAGGCCCAGCAGTTGTCTGCAATGAGGCTGCAGCATGACCTGATGAAGAAATGTGAAGACCAGATGTTGAAGCAAATTGAGAAGCTGCTCAGCCATCAGAGCCAACTCAGGGAACGTCTCGCCAAGATAAAGTGGGAGTCTAAAGAGGAAAAGGAATACTTCCTTCAAGAGATCTCAAGGTTCAACAGTGACTTCAGTCTTCGAGGAACCAGAGACGTAGTGTTCGAgagccaaacacacactgagctcctggACCTGGAGAGGGAGGTGGAGGCATTATACAAAGAGATGGAGCTGATGAGCCACAGGAACAGTCGAATGAGCTCCAtgcaggaggagaagagagtgCTCCAGCTCAAAATGCAGGGCCTGTATAACGTCCACAAAGACCTGGATCATCAGTTGAGTGAGGCTGAAGCAATGACAGAATCTCTGAGAGCCGAGAGCCAGTTTGTCAGTCAGAAACCTCTCACTGACAGCACCTGTCTGAAGCTGAGGGAGGAGCTGGAGATGTATAAAGAAGGAGAGCTTCTGCGAGAGGCCCTCAGCTCTGAAATACACTTCCTGAAGTCTAAGCTGGACAGCAGCCAGGGAAGTGAGCAGCATTAGGTTTGGCATtaactctgaggacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260834 lncRNA upstream 141733 5225577 ~ 5248686 (+) False atrnl1a
TU260823 lncRNA upstream 504194 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 506316 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 506764 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 560318 4829619 ~ 4830101 (+) True G191981
TU260904 lncRNA downstream 428181 5842533 ~ 5842887 (+) True G192103
TU260901 lncRNA downstream 635046 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 854045 6268397 ~ 6287371 (+) True G192123
TU260938 lncRNA downstream 858570 6272922 ~ 6290271 (+) True G192125
TU260973 lncRNA downstream 897044 6311396 ~ 6315101 (+) True G192143
XM_039784008.1 mRNA upstream 141683 4903722 ~ 5248736 (+) True atrnl1a
XM_039784009.1 mRNA upstream 141683 4903722 ~ 5248736 (+) False atrnl1a
XM_039784010.1 mRNA upstream 141683 4903722 ~ 5248736 (+) False atrnl1a
XM_039784011.1 mRNA upstream 416862 4903722 ~ 4973557 (+) False atrnl1a
XM_039784789.1 mRNA upstream 753894 4629151 ~ 4636525 (+) False LOC120548511
XM_039784271.1 mRNA downstream 364837 5779189 ~ 6190313 (+) True LOC120548190
XM_039783881.1 mRNA downstream 881895 6296247 ~ 6308199 (+) True setd4
XM_039783882.1 mRNA downstream 881895 6296247 ~ 6308199 (+) False setd4
XM_039783888.1 mRNA downstream 910163 6324515 ~ 6360991 (+) True itsn1
XM_039783890.1 mRNA downstream 910163 6324515 ~ 6360991 (+) False itsn1
TU260824 other upstream 503396 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 1101775 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 1107699 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 2239875 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 2240533 3149814 ~ 3149886 (+) True trnar-acg_20
TU260911 other downstream 605770 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 605770 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 910163 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 910163 6324515 ~ 6360991 (+) False itsn1
TU261063 other downstream 1071279 6485631 ~ 6505819 (+) False LOC120548025

Expression Profile