RNA id: XM_039784047.1


Basic Information

Item Value
RNA id XM_039784047.1
length 3139
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC120548087
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11936325 ~ 11985948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATACGAAGAGGGGCAGGTCCAGTGAGCAGCCCACAGTGGGGTGTCAACCTACTAAACCTCGGTATAGTATAAAATGAAGCAGGCAGAGCTTGTTTGGCCTTTGCTTTAGTTGTGGAGGAAAGAGGAGTCTTTTTGTTCCTGATTGAACTACCCGGTGCCACCCTGATCAAATCCTAACTGAGCACGTGCCTCTGACTTTGGAACAAGAAACATGACGGCCATCAATGCACCTCGGGACAAATACAATGCAGTatggataattttttttatcctggGCTTGGGAACCCTATTACCGTGGAATTTCTTCATGACGGCAACAATGTACTTCACAAGTAGGCTGAAGGACGACCCCTCCTTCAATCAGACGGCAAATGAGACTTTGAATGGCGGAGACACTCGCAGTGTGCTGGAGTCAAAGTTTAACAATGTGATGACGCTCTGCGCCATGGTGCCTCTGCTCATCTTCACCTGCCTCAACTCCTTCCTACACCAGAGGATTCCTCAGAAGTTTCGAATCTCTGGCAGCCTGGTGGTCATCCTGGTGGTTTTCCTGTTGACGGCGGTGTTCGTCAAGGTGGACGTGGCCCCACTGCCCTTCTTCACCATCACTATGATCAAAATTATCTGCATCAACTCGTTCGGGGCGATTCTTCAGGGCAGCTTGTTCGGGCTGGCGGGGATACTGCCTGCCTCCTACACCACTCCCATCATGAGTGGACAGGGGCTGGCCGGCACCTTTGCTGCTTTCTCCATGATCTGTGCACTGGCCTcTGGATCAGCCCTTCAGGACAGTGCTTTTGGTTACTTTATCACAGCCTGTGTTGTTATTCTCCTGGCCATAATGTCCTACTTCGTTCTGCCCAGGATGgagTTTTTCCAGTACCACATGGAGAGTAATGGATCCAGGCCCTCTGCCGATGAGGATAACAACATGGACTTACTCAAAAAAGAAAGTCCAGCAGAGAAGCGACCGGTGGTGAGTCTGATGGAGGACGAGGCCAAACCCACCGTGTCTGTGGTAAACATCTTCAAACAGATCTGGGTGATGGCTCTGTCCGTGTGCTTCATCTTCACCATCACCATCGGAACATTCCCAGCCGTGACCGTGGATGTCAAGTCGACGTTAGCTGATGGAGGCACCTGGGGAACTTACTTCATCCCTGTGTCATGTTTCCTCCTCTTTAACCTGATGGATTGGGCTGGCAGGAGTCTGACGGCCGTCTGTATGTGGccgGACAAAGACAGTATGTGGCTTCCTGTCCTGGTGGGTCTGCGGGTCGTCTTCGTCCCTCTTTTCATGCTGTGTAACGTCCAGCCTCGTTACTACCTCCCCGTGCCGTTTGACCACGACGCCTGGTACATCGTCTTCATgatcttcttctccttctccaaCGGATACCTGGCCAGTCTCTGCATGTGCTTCGGACCCAAGAAGGTCTCCCAGCATGAGGCGGAGACGGCCGGGGCCATCATGGCCTTCTTCTTGTCCCTCGGCTTGGCGCTGGGCGCTGCAGTCTCATTTGCTTTCCGGGCCATGATCTGAAAGATCTCCAGTCAGACCTTCAGTAGACGTAGACTTAGATTAGACCACCCCGccctcacacacactccccgTCTTTACCGGTCACGGGAGAGCCGTGCTTCTCTGCAACAATCTCCCCGACTGAGTGGAGACGGCACGGCAGATAAGAAGACTAGAGGACCTCAGTCTTCTGAAGTGTACAGCAGAGACTTGTCTCATCCAGCCATCTCGGCAACAATATAAGCTGAAACATGTTAAGTGAATATTAGTTCTCTCGATGCCATTGATCAAACGGGTTGTTTCTCTGTGATGGAATTGAAGAGTTCAGAGTGCAACTCAACAAGCAAATCGAAACCAAAAGTGTAGAGAAATCCGTTGCAGTGGACTCGTCATGACCGCAGAATTTTTTCAAGGTGTGTTTTAACTATCCCCGGACATCCCGAATCTTGAGCCCAGTGTTAGTGAAGTCCATAAAAAGTTCTTGTGATAAAATTGCTTTTAAAGTAATAAATTTCTTTCACTTTCTTTAGAAATCCTAAGAAGTTATGATGGTGTGTACATAAAGTcttaacacatttttattaatgAGGCTCTTAGATTCTGCTGTTTGGCTCATCTACATAAACCGGTAAATTTTAACCCATCAGTTTGTAAACTGATCTCaatgtgaaatttttttttttatgactctGGACTGGACTTTTTTAACTTTGATCAAGCCAAATACATAAAGACAACATGGGAAAATGATGAACTTTGAAGGGAGATTACCATTATCCATCCAACGGCTAATTATAAATGTGCCTTGTGTAAACTGCTTCGCTCCCTCGCTCTACTTGTCGATTTGggtcactttttatttttaaacttccTCATAACAAATGAGTAAATTCTCTAAGAATGTAAGGCTGGACTAAATCCTAAAGACCATGTTTCAATCAATCTGCTGAATATTTGTTGTCTTAGAGagtggtgtttgttttttagttaTAGATGAAGTTGTACCAGTGTTGCTCTATTTGGTTTGCCTGAAAACACAGAGGTCACGTTTTCGGTCTAGATTTTTCAGCCCACATGTTGTTTACTGTTAATGTGTCTTCCTGATAAACATATTTTGCCACAATGTATTTTTGAATGcagcaaaaagaaaatctgcagcCGTCAGTGACGTGAAATGTACCATTTATGAGTGAGATATTCTTTCGCCTTCATGAGCCTGTGACATTTCTCATTTGAACATGTTTTCATAGATAAGTTTTGTatccaaaatatttttttgtccgTTTTTCAAACTTCACGACTTGGCTCTCGCTGAGTTGGTAGTGTTATGAATGAGGAGGTAAAAGGCCTCATGCCCATCAGTGTTATATTTCTGTGGccttttggatgcttttttaaattttttttttttttttaagtttgcttTAATTGTCCAAAAATTACTCATAATGCAAGCTGTATAGATCCTAACtgcctgttgtttttttaaagcataaCATTGGTCTGTTCTTCCATACTTAGTGTTTGGTTGGTATGGGAGTCATGGACCATTAAAAAGTTACTTATATTGCAGCTTCAAACCGTTCTGTGATcaaataaaactgtatttttaagaA

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
K15014 SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262313 lncRNA upstream 76439 11865425 ~ 11891203 (+) False zbtb18
TU262324 lncRNA upstream 175685 11786413 ~ 11791957 (+) True G193172
TU262300 lncRNA upstream 251792 11715216 ~ 11715850 (+) True G193161
TU262190 lncRNA upstream 383853 11582793 ~ 11583789 (+) False rtkn2a
TU262157 lncRNA upstream 548540 11394094 ~ 11419102 (+) True G193047
TU262376 lncRNA downstream 1326 11987274 ~ 11991708 (+) False G193213
TU262377 lncRNA downstream 1326 11987274 ~ 11991708 (+) False G193213
TU262378 lncRNA downstream 1326 11987274 ~ 11991708 (+) False G193213
TU262379 lncRNA downstream 1326 11987274 ~ 11990215 (+) True G193213
TU262381 lncRNA downstream 1326 11987274 ~ 11990215 (+) False G193213
XM_039782941.1 mRNA upstream 40209 11924094 ~ 11927433 (+) True LOC120547506
XM_039784037.1 mRNA upstream 99956 11860952 ~ 11867686 (+) False zbtb18
XM_039783906.1 mRNA downstream 98802 12084750 ~ 12104791 (+) False ifngr1l
XM_039783905.1 mRNA downstream 98804 12084752 ~ 12104791 (+) True ifngr1l
XM_039783437.1 mRNA downstream 121488 12107436 ~ 12113315 (+) True il22ra2
XM_039783438.1 mRNA downstream 156447 12142395 ~ 12175956 (+) True pcnx2
XM_039783439.1 mRNA downstream 156447 12142395 ~ 12175956 (+) False pcnx2
XR_005637161.1 other upstream 220940 11717893 ~ 11746702 (+) False sdccag8
TU262145 other upstream 599019 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 602038 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 815401 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 1011064 10953139 ~ 10956578 (+) False LOC120548129
XR_005637197.1 other downstream 261003 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 261003 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 301098 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 301098 12287046 ~ 12290232 (+) False sf3b5
TU262526 other downstream 301098 12287046 ~ 12290232 (+) False sf3b5

Expression Profile