RNA id: XM_039784095.1


Basic Information

Item Value
RNA id XM_039784095.1
length 2529
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120548093
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11681816 ~ 11693240 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCCCTTAGGTCCCAAAACAGGTTGCATGACACACACTCGGGTGGGGCATTTTTATCTAGTTCCACACCTCATCTACTGACACTCTTTCCGCAAAGACGCACAGGATACTAGGCTATATAATCGAACGGACTACACCGCTACACTAGTGTTTCGCCCCACAGCTCGTCCTTCTCTCTAACCCGCTCCACACACTCCGATCGTCGGTCATGTTTCGCTGTGGGATCGCCTACCCCCGATGCAGGTGGATCGtgcccctgctgctgctcttcgcCATTATTTTTGACATCATCGCCATCGCCGCTACCTCGGGATGGGTCGAGGATGAGAACGCCAAGTCTCACTACGCCAGTATGTGGCAACAGTGCCGAGGCAGGAATGACAACTGGGACTGCAAGTCGCTCATGGAGTTCTCTTGGGCCCAGGCAGTCGCTGCTCTGATGATCATCGccctcatcatcctcatcatcgcCTTCATCATCTCCTGTGTGGCTTTGTGCTGCACATTAAACATCACTCTTCTGCCCCTAATAGGAGCACTGTTGATCATTGTTGTGGTTCTCCAAGTCATCGCTCTGATCATCTACCCCTGCAAATTTAATGAGTTGATCTTCGAGGGCCACTATTACTACACCTGGGCCTATGGCTTCGGCTGGGGCGCCACCATCCTCTGCATCGGCTGTGCCATCCTCTTCTGCTGCCTGCCACGCTACGAGGATGAGCTGAGCGGCCTGGCTAAGACCAAATACATCTATTCCTCTGCTTAAAAACTAAACCTGTACAACCACCCAATTACAGATATTTTCACTTTCCACTCTGAGCTGGAACTGTGCTGGCCATGGAACATTTGTAGACAGTTTTACACCATTTCACCAAAGATCCATGATATCTCAATTCAGTTAGATTTAGTTTGGCATTGGGAAAACTGTCCTCTAACATCCAAGAGTGAAGCCAGAAGCAAGGGGTGATTGTTACTGGAAGTGGACTGTGATTGGATGCTCCATCTGCTTTAATGTACAGACTTCTGTTTTAGATTAAGTCAGCATCATACAAAATAGTTTTTACCATTCTGTTTTTTCACATTCCGCATTTGAGTGAGATGTATTCCTCATTTTATCTGTACTTTTTACCTGTAATTCTCAATGCAATATCACCAAAGTGCACTTAACCTAAGGGATGTAATTATGTGTAAAGCGTAGATTTCCTAAAACCTTGGTAAAAGAGCAGTTTAGACTAAAAATTGCACAGGATGCAAAAGGAATCATTAATCATCATTTGCTTTTTTCCCAAgtgttataattattttttcttatttctttaatgtgtgtgttttattctgTATGTGGTATGAAAGAAGCAAAGGCTTGGAGTCAGAAGCTGAATGTAATCTATACATATGGAAATTTAGTTTAAAAGTCGTTttagtaccttttttttttatgcatctatttttttttttttttttataattctgaTCTGCTTTTTATCTCCAgagtttttttattcttatttactTATTACCAAAGGGGTATAACTGTGGGAGTTTGCTGTGCTGTCTTTGTATCTGTTCTGAAcactaataatactaatacaCTCGATGAGCAGACACAGTGTGTGATGGTTGATtcagtcatttttttctttgtcacacTAAACTGGAAGCAAATTTATATTCATTTCCATTGAGCTTGATCATTAATCTGTCTCGTGCAAATTTAGAAAAAGtttaaaacagtttttaatgtctTGTTCCCTCAAAGTAGGTAGTGCATTCAGAGAGAAGCCTTTCCTTAAAATAGGTTTTTAGTAACAAATAGATGACCAATCATGTATTTCCTAAAGGCCTTCATAAGTCTTGATAATGCTTCTTTGGCTAACCCATCTGCCGGTATGATGAGAACTGAGACCAAGGTGTACAATCTTCTGACATACTTTGTGTAAAACTTGTGCCTTAGCTTCTTCAGTGTTGTGTTGTTGAATGTCCAATCAAACTGCTCAGTCTGGTTTTACTTACTCACGCTTGATCCCAGTCAACAGCAACATTTCTGTTCATGCCAAGGCCAAATGCATGCCCAAACAAGACTAAGCTATATTGTTATATTACATGAAAGAGTTCTGAGGAAAGATCATTTGACTGTTGAATGAAAAAAGAGAAGTGATAAATGATCTTAGAGAAGTAAGTAAAACTCATCCCATGCTTTTATCATCTTAGAGTCTTTAAAGTTATTTACGCAGCAAATTACTGCATAAATAACTTTATGAATTGGTGGAAGTTTGAACTGAGAATCTGGAGAGATTCAGGCAGATTTATACTGTCTGTATGTCTCAAAGGTGAGGTGAAAATGAGCATGAATTTCTCAACACCAGCTTTTTCAGATATTATTAGTCACTGTATGGGTATATTATGTACTACAGAGAATGTTCTATTAACATCCATCGACTTCTGGAAATCACCCAGCTGTTCTGCTGTAGTATGAATTgattattttggtagtctgtatttttatgcaataaaaatcttttttcaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10136 PERP; TP53 apoptosis effector

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262190 lncRNA upstream 98027 11582793 ~ 11583789 (+) False rtkn2a
TU262157 lncRNA upstream 262714 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 295491 11383093 ~ 11386325 (+) True G193041
TU262094 lncRNA upstream 531608 11146804 ~ 11150208 (+) True G192995
TU262097 lncRNA upstream 542450 11135080 ~ 11139366 (+) False G192997
TU262300 lncRNA downstream 21976 11715216 ~ 11715850 (+) True G193161
TU262324 lncRNA downstream 93173 11786413 ~ 11791957 (+) True G193172
TU262313 lncRNA downstream 172185 11865425 ~ 11891203 (+) False zbtb18
TU262376 lncRNA downstream 294034 11987274 ~ 11991708 (+) False G193213
TU262377 lncRNA downstream 294034 11987274 ~ 11991708 (+) False G193213
XM_039783016.1 mRNA upstream 2705 11669373 ~ 11679111 (+) True LOC120547549
XM_039784192.1 mRNA upstream 97644 11574398 ~ 11584172 (+) True rtkn2a
XM_039784193.1 mRNA upstream 152589 11527317 ~ 11529227 (+) True hint1
XM_039783269.1 mRNA upstream 162897 11508095 ~ 11518919 (+) True abcg5
XM_039783267.1 mRNA upstream 189498 11434600 ~ 11492318 (+) True lrpprc
XM_039784364.1 mRNA downstream 4366 11697606 ~ 11710406 (+) True tnfaip3
XM_039784365.1 mRNA downstream 24653 11717893 ~ 11750457 (+) True sdccag8
XM_039784370.1 mRNA downstream 24653 11717893 ~ 11724829 (+) False sdccag8
XM_039784367.1 mRNA downstream 24655 11717895 ~ 11790539 (+) False sdccag8
XM_039784366.1 mRNA downstream 24655 11717895 ~ 11752816 (+) False sdccag8
TU262145 other upstream 313193 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 316212 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 529575 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 725238 10953139 ~ 10956578 (+) False LOC120548129
TU261928 other upstream 1092900 10586822 ~ 10588916 (+) False mrpl57
XR_005637161.1 other downstream 24653 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 553711 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 553711 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 593806 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 593806 12287046 ~ 12290232 (+) False sf3b5

Expression Profile