RNA id: XM_039784193.1


Basic Information

Item Value
RNA id XM_039784193.1
length 598
RNA type mRNA
GC content 0.48
exon number 3
gene id hint1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11527317 ~ 11529227 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTTTCACACAACCAAAAGCTGCGCTGACCGACTGGCGGCTATATGCGCCAACATGGCTGATGAAATGGCAAAAGCTCAGGCTGCCAAGCCTGGCGGTGACACAATATTTGGAAAAATCATACGCAAAGAGATTCCTGCCAAACTTCTCTATGAAGATGACCAGTGTGTGGCCTTCCCTGATATTTCACCTCAAGCTCCTACTCACATCCTCGTTGTCCCCAAAAAGCCAATTGTTCAACTGTCACAGGCGGAGGATAGTGATGCTGCATTGTTGGGCCACTTGTTGCTAGTTGCGAAGAAGTGTGCTCAAGAAGCAGGCCTGCCTAAAGGCTACAGAATTGTCATCAATGATGGGCCAGATGGAGGCCAGTCGGTCTACCATATCCACATCCATGTCCTGGGTGGACGCATGATGGCATGGCCCCCCGGCTAACCTCCATCTTCCAACACAGACCACCCTGCCATCAGTGGTCACGTCTGTTGTCTGACAACCAGTACTGTTCAATTTCAACTAAACCAGTTTGTCATGGGAAATAAGAGCCAAACAAAACCTGCTAATTCATCaatggtaataaaaaaaaagcacttcaCAACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K02503 HINT1, hinT, hit; histidine triad (HIT) family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262157 lncRNA upstream 108215 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 140992 11383093 ~ 11386325 (+) True G193041
TU262094 lncRNA upstream 377109 11146804 ~ 11150208 (+) True G192995
TU262096 lncRNA upstream 387951 11135080 ~ 11139366 (+) True G192997
TU262190 lncRNA downstream 53566 11582793 ~ 11583789 (+) False rtkn2a
TU262300 lncRNA downstream 185989 11715216 ~ 11715850 (+) True G193161
TU262324 lncRNA downstream 257186 11786413 ~ 11791957 (+) True G193172
TU262313 lncRNA downstream 336198 11865425 ~ 11891203 (+) False zbtb18
TU262376 lncRNA downstream 458047 11987274 ~ 11991708 (+) False G193213
XM_039783269.1 mRNA upstream 8398 11508095 ~ 11518919 (+) True abcg5
XM_039783267.1 mRNA upstream 34999 11434600 ~ 11492318 (+) True lrpprc
XM_039784690.1 mRNA upstream 93321 11431298 ~ 11433996 (+) True znhit2
XM_039784261.1 mRNA upstream 159590 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA upstream 159590 11357040 ~ 11367727 (+) False prepl
XM_039784192.1 mRNA downstream 45171 11574398 ~ 11584172 (+) True rtkn2a
XM_039783016.1 mRNA downstream 140146 11669373 ~ 11679111 (+) True LOC120547549
XM_039784095.1 mRNA downstream 152589 11681816 ~ 11693240 (+) True LOC120548093
XM_039784364.1 mRNA downstream 168379 11697606 ~ 11710406 (+) True tnfaip3
XM_039784365.1 mRNA downstream 188666 11717893 ~ 11750457 (+) True sdccag8
TU262145 other upstream 158694 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 161713 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 375076 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 570739 10953139 ~ 10956578 (+) False LOC120548129
TU261928 other upstream 938401 10586822 ~ 10588916 (+) False mrpl57
XR_005637161.1 other downstream 188666 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 717724 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 717724 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 757819 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 757819 12287046 ~ 12290232 (+) False sf3b5

Expression Profile