RNA id: XM_039784231.1


Basic Information

Item Value
RNA id XM_039784231.1
length 1059
RNA type mRNA
GC content 0.51
exon number 10
gene id supt3h
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6842493 ~ 6860186 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGGGAGACGCCCGCAGGCCTCTGCACGAGACTGCAGCTCTGGTGGAGGATATTGTGCACACGCAGCTCATTACTATGGTAACGCAAATACAGTACACCTGCACCAGGCCTGCGAGGGTGCGTTTCTTCGAGGGTCGAGGGTCATTTCACCGGAGGACATCCTGTTCCTGATGAGGAGGGACAAGAGGAAGGTGGCTAGATTGTTAAAATATCTCCAGTTTAGAGATTATAAATCCAAACTACTCAAAACTGTGGAGGATGAAGAAATGCTGCAAGAAACGGacaAATCGGGTGTTGCCGGCGGTACCCAGCGGAGGCAGCGATTGGCTCAGGATTTTCTGGTGTGGATGGATCAGACTGGCGAGCTCCTGTCGTTGGCTGAGCGACACGAAGTAGATCCAGTCAAACAGGAGCGGATGGAGCGTTTGGAGCGTCAGACTCGAACTATGGACCAGACTCAGTACTCTGAGTTCTGTGAGAGTAGACAGCTCAGCTTTGctAAGAAGGCGTCAAAGTTTCGGGACTGGCTGGACTGCAGCACTTTAGAGCTGAAACCCAACAGcatctccatggagatcttgtCATACCTGGCCTATGAGACCGTTGCCCAGATTGTGGATTTGTCTCTGTTGGTAAAGCAAGAAATGACCGCGAAAACAAATCCCGTCGGCCGTGTTATCTCTGCCAGCTACAtccactacaacacacacactgagGTAAAGAAGGATCCAGACTCACCTGAAGCCACTCCCCCTTCCACGCCTAGCTCCTCCCACTCATCCAAATCCCTCCCACAGGGTAACGGCAGCCTGGACTGCCGAGGCAGACAGAGGAAACGCAAAAAGAGTTGTCCGGCTACAGTGGAACCTCCCAGTGGAGCCATCCAGCCCTGTCACATCAGAGAGGCTATTAGAAGATACAACTACAGACACACAAGTGCTTATTGGAGAAGTGGGATGGCCTTCCTCGCCTGCTGAAGATGCAACCCATTCTTCTTATGTACGTGCACGaataatttccttttttgttcCATTGTTGTAATAAAGACTTTTCAGTAA

Function

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261124 lncRNA upstream 60119 6788199 ~ 6789076 (+) False zc3h15
TU261117 lncRNA upstream 161620 6687332 ~ 6687575 (+) True G192252
TU261109 lncRNA upstream 173212 6674615 ~ 6675983 (+) True G192244
TU261110 lncRNA upstream 181485 6667384 ~ 6667710 (+) True G192245
TU261076 lncRNA upstream 338753 6509724 ~ 6510442 (+) True G192214
TU261158 lncRNA downstream 140 6860326 ~ 6862811 (+) True G192283
TU261154 lncRNA downstream 11778 6871964 ~ 6934678 (+) False G192282
TU261213 lncRNA downstream 262014 7122200 ~ 7123178 (+) True G192329
TU261217 lncRNA downstream 268666 7128852 ~ 7219024 (+) True G192333
TU261246 lncRNA downstream 975237 7835423 ~ 7835707 (+) True G192359
XM_039783135.1 mRNA upstream 11205 6829571 ~ 6837990 (+) True LOC120547615
XM_039783136.1 mRNA upstream 11207 6829571 ~ 6837988 (+) False LOC120547615
XM_039783390.1 mRNA upstream 45438 6800514 ~ 6803757 (+) False LOC120547751
XM_039783391.1 mRNA upstream 45438 6800927 ~ 6803757 (+) False LOC120547751
XM_039783386.1 mRNA upstream 60109 6775743 ~ 6789086 (+) True zc3h15
XM_039783873.1 mRNA downstream 833402 7693588 ~ 7790218 (+) True cdh11
XM_039783874.1 mRNA downstream 833402 7693588 ~ 7790218 (+) False cdh11
XM_039783875.1 mRNA downstream 833402 7693588 ~ 7790218 (+) False cdh11
XM_039783876.1 mRNA downstream 833402 7693588 ~ 7790218 (+) False cdh11
XM_039783877.1 mRNA downstream 1027802 7887988 ~ 7905745 (+) False chrna1
TU261142 other upstream 44643 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 343376 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 348100 6485631 ~ 6501095 (+) False LOC120548025
XR_005637124.1 other upstream 488204 6324515 ~ 6360991 (+) False itsn1
unassigned_transcript_1115 other downstream 1090931 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 2746339 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 3454760 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 3581341 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 3726592 10586778 ~ 10589051 (+) False mrpl57

Expression Profile