RNA id: XM_039784314.1


Basic Information

Item Value
RNA id XM_039784314.1
length 3855
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120548221
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6596041 ~ 6672024 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTAGTGGgaggcttttctttttttttttgaaaagaagagaagaattaaaaaaaaaacacatttagacAACGACAAGAAGATCAGATTGGAAAGAAAGGAGGAGCAGAGggtgaaatatttaaaaagagaCTGAGGCGAGATGAGCAGAGAGAAGCCAAAGTCAAAGAGTCACCGGCAAAAActtagagaagagagagaataaaTCAGAGCAGCTGGGGGGAGAAACTGCGCTAcgccttttctttttccttattTCTTCTGTCCCTCTACTACTTCATaaaacagaggaggagagacacaATGAGGAGAGCGGAAGAGAGTCGAGGAAgatagaagaagaaggaggagaggaagcagACTTTTTCTTCAAATTCCAGATAGATACACAAGATATTTAAGTGCAAGAGACAAATCCAATGGCGTGCTACTACATTGTGATCAGTTCCACCCACCTGCATGATGGGCAGCTGAGGAGCATCAAGGGGGTGTTCAGAGGTCCAATAGGAACCAACAGCCAAAGAAACACGGAGGAAGGAGACTCCAGTTTTTACTGCGAGCTTTGCGATAAGCAGTACGTGAGACACCAGCAGTACGACAACCACATCAACTCCTACGACCACCACCACAAGCAGCGCCTCAAGGAGCTGAAACAGAGGGAGTTCTACAGAGCGCTGGCCTGCAGGAGGCAGAGGAGACgcagggaggagaagagagagctgAGGAGGCTCCAGAAGCATGAAGAGAGGAGAACGGGGGAGTGcgCTCCAGGTTCTGGTCCCATGTTCCGGTCCACCACAGTGGCAGTGGAACCAGCAAACCAGACCAGACCGGACTCTGTGCAGAACTGGGGCGACAACAACACGAGCAGCGCCACACAGGGAACAAATCCTCAAACACCGCTGATCCAGCCCTTCCTTCCCCTGGACCCTGCACTGGAAACCAGACTCCTGAGCAACACGCAGTGGGCTTACGACCCAATGGACACCAACAGCACTCAGACTACTGCTGCTGAATCCTGCATCCTCAACGAGACCCAAATGGACTACAATGAGCTGACCACAAACAACACAATGAACACAAATATCAACACTACCAAAACCAGGCACTTTAACAAGATCCCTTGGGCTCACAATTATTTAAGCAACCCCATTACTCCCAATAACATCCCAACGACTGCCACCAACACCGCCACTAATGGCTCCATTTTCAACACAACCACCGCGACCAACTTCAGCAAGAAAATCACCCCGGCCATTACTACTAACGCGGCCGACATCGGCGACAACAGTGGCGGAGCAGTGTGCGGACCAAGCGTCCAGTCCATCCGCAGCAGAGTCCGCCCCGTGTCCTTCTCACTGCCCAAAAGGAGCTGTGTCCTCCTCCACCAATCAGCTGCCGTCTTCATCCAAGCCGGGCGAGGCTCTGGCTTGTCGGGGAAGCAAGAAGGTGTGATGGCGCAAGAAAGAGTCAAAGATCCGGGGGAAAAAGTTGCAGATCAGCAGCTCAAATCTCCAGTATCTGCAGACGTGGACGTTGTAGGCATGTGCCACTCGGACACTGGAAACCAGCGCAGTGTGGACATTAAAACTGCAATCCAGCACTCTGAGGCTGGAACCAATATGCCTCCTGAGAGGGGAACTGGAGGACTCTCTGGGACTGGAGCCCAGGTTTCTTTATTTAATCGCAATGTAATCAGAGTTGAGGACTTTGTTATCAGTGGGAATGGAGCCCAGCACTCCTTATGTAATGACAACGGGACTGGAGCCCAAGTCGGCAGGGAAAGTGGGACTGGAGCTCATCAATATTTAAACAGTGGGATACCAGGGCAGATTTCTGACAGTGTTAGCACAGTTGATGCTAAAGATTCAGTATGCAGAGACAGCGAGGCTGAAACCCACGGCGATGTGGCCTATCGTACAGAGTTAAACCCCACCCAAGAATTGAAAGATCTGCTTAGTCCCGCTACAAATCAGCAAAAGTCAATAGCTGGTGTTTTAAATGACACCAAAGAGTCTTCAATCCAAACACAGCCCAAAGAATCAAGTTTCTCTCTGTCAAACGGGGCTAAAGAATCAACTTTTTTGCCTACAAATCGCCCCAAAGAGCCGTTTTGCCGCGTCCTGAGCAGAGACGGTAGCCGGGTTCTTCTCTGGCCGTCGGAGATGGTTAGCTACACCAAGACCTTGCCCTCCATCTCCTACAGCATAAACCCTCTACTGTACGACTTCAGAGCACATAACAGGGCCAAGGAAGGGGGTGAGGAAAAGAAAGGGctagaggaagggagggagagaataaAGCCGTCTGTGATCAAACAACCTGACTGCCAACAGAGGCAGGAAGCtatggagggaggaagggaggtgAAGATAGATGAAAGGGAAGAAGGAAGACAGGCAGGTAATCCTATGGAACCTGTAGCCCATTGTAGCGGTGGCGGCGCGGTTCCGGCACGCTGCGGCTGCCGCGATGAAAGCGCTTTAAAATTTGTTCCAGTTTCCGCAGAGTGCCACCTTGCACCGTCGCTGGGCCTTCAAAAAACaggcaggaagaggaggaggaagaggaggggaggggtgaGGAGAGGAATGAGGAAGAGGGGtaggaggaaaagaggagaggagaccgAAAGGGGAAGAAGGATAATAAGTAGAGTTTCTGAGAACCAGATGTTTGAAgggagaggagacgagaggtTGAAAAGAGAGGGCAgcgaaaaagaggagaggagagaaaaagggcTATTAAGTAACCCTGCAGTGCATCGGCTGgtaggagggagagaaaagaagatgaggggagaggagagaaggataAGAGGAGATCAGTCAGAGCGAGAGAGGGCAGGTAGAAATGACGAGAAGAGAGGAGCGCTATTAAGTAATCTTCCTGTGAATCGGTGTAATCGGTGTAACCAGCTGTGTCTGCAGGTGAAAAGGGAGGCCAGCAAGCATCAATCCCAGCAATCAGCCTCCGGGTGGGGCCAGGGGCTCAGAAAGCTCCTCTGTAGGGGTGCAGCATGTAACTCAGTGATTAGCCCCGTCCCTGGGTCTGTTATAGAGACGCCATGCTGTCCTGCAATTACACCCGAGCCTGCTCTGAATGACAGAGAGACGGGGGAGATGCACAAAAATACACAAGCAGGGAAGCACGAAGGGCAGAGACATGAGGAGCAAAGCAATCTGAGCAAGACAGAGATAAGCGCCGTTCAGGATGCTAAAGAAAACGCGTGTAACCTAGTGATTAGCGGTGATTCTTTTCCCTGTCGAGAAGCAGCGCGCGAGCCAGAAATGTGTCTTGTTCCTACACCTCATAGGGAAACAGCATGGGATCCAGCGATTAGCCTTGTCCCCGCACCCTTTAGAGGAACAGCGGGTagtcaaagacaaacaatacCTGCAGCAAGCAGCCATCCTGCGTTAGGCCTGGCCCCACGCTGCTCCGcacaacagacagaaacacagccGAGAATCAGATCGGCCTGCGGAGACATGACCCTCCCTGGCGGTGCAACGTTTTCGATGTTGAAGAGAGTAGAAACAACCCGgcaagagaaagacagaacCGCCCGAGGCTGGGGAAACGCCAAAGAAGAAACGGAAAAGGGGAAGGAGACAAACGAGGAGAGCTGTAGGTGTTTTGAGACAGGAAAGGGCGTGCGAGGATGCCGCAAAACTCAACAAGACTGGGACACTTCTGGACAACTGCCTGGGCAGTCCAGAGGGCGACAGGACGGAGAGAAACACAGACTGCCACTCCGGGATGAAACACCGTCTGTGTCATGAACCAAATAACAGCGAGGGAACGTTTACCTGTAACAGCGCTGACAAACTCAAACACCACTGCCGCCCTCC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261076 lncRNA upstream 85599 6509724 ~ 6510442 (+) True G192214
TU261069 lncRNA upstream 88605 6506501 ~ 6507436 (+) False G192212
TU261072 lncRNA upstream 88692 6506321 ~ 6507349 (+) True G192212
TU261109 lncRNA downstream 2591 6674615 ~ 6675983 (+) True G192244
TU261117 lncRNA downstream 15308 6687332 ~ 6687575 (+) True G192252
TU261124 lncRNA downstream 116175 6788199 ~ 6789076 (+) False zc3h15
TU261156 lncRNA downstream 161993 6834017 ~ 6874217 (+) True G192282
TU261158 lncRNA downstream 188302 6860326 ~ 6862811 (+) True G192283
XM_039783481.1 mRNA upstream 12303 6553886 ~ 6583738 (+) True LOC120547793
XM_039783480.1 mRNA upstream 12303 6555598 ~ 6583738 (+) False LOC120547793
XM_039783943.1 mRNA upstream 90190 6485593 ~ 6505851 (+) True LOC120548025
XM_039783942.1 mRNA upstream 94916 6485581 ~ 6501125 (+) False LOC120548025
XM_039783944.1 mRNA upstream 94916 6485586 ~ 6501125 (+) False LOC120548025
XM_039783386.1 mRNA downstream 103719 6775743 ~ 6789086 (+) True zc3h15
XM_039783390.1 mRNA downstream 128490 6800514 ~ 6803757 (+) False LOC120547751
XM_039783391.1 mRNA downstream 128903 6800927 ~ 6803757 (+) False LOC120547751
XM_039783135.1 mRNA downstream 157547 6829571 ~ 6837990 (+) True LOC120547615
XM_039783136.1 mRNA downstream 157547 6829571 ~ 6837988 (+) False LOC120547615
TU261063 other upstream 90222 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 94946 6485631 ~ 6501095 (+) False LOC120548025
TU260911 other upstream 199142 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU261142 other downstream 128500 6800524 ~ 6804552 (+) True LOC120547751
unassigned_transcript_1115 other downstream 1279093 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 2934501 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 3642922 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 3769503 10441527 ~ 10442085 (+) True G192834

Expression Profile