RNA id: XM_039784352.1


Basic Information

Item Value
RNA id XM_039784352.1
length 2972
RNA type mRNA
GC content 0.52
exon number 10
gene id aftphb
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8917425 ~ 8927490 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggcggggctaagttcggccgGCATCCAGGCTAAGTAATTACAGCGCCTTGAAACGGAACATAGTGAGAGGTCTTTACTTCTTCCATATCCCCGTTAATACTTAGGGAGAATGGTGACAGAGGATGGAGAGACAAGCTGCGGCACAAGAAATAGACAAGAGGTGCATGAGGCCTTCAGGTGCTGCTAGGAGAACCCATGGAGCCGGACATCATACCCTTgcacccctcctccccccctccactggatgatgatgatggcgaTGGGGATGCGGGGTCAGAGGAGGACGAATTTGGGGATTTTGGGGGGTTCTCTGTCGAGGTGTCCTGCTCGCCTCTTGGCTTTATTGATTCTACAGATTCGCCATCCAGCCTCAGACAGCCTTCTACCACCACAAAGCCAGCCACACATCAACCCAACTGTAGCTTGAATAACCCAGTTGAACAGTCCCAACCCACATCCACTGTGGACTCGGGGTCCGGCAGGGGCAACATTTACGTGGAAGGTCAGGATTGTAATGCAGAATCATGTGTGCACCTCACAAATGGTTACTCTGAAAGAGACCACAACTCTGGGACCCACATAGCGTCTGCAGTGGGTGCATGCTCTCCCATGGAAGAAACAGGGTTTGCTGATTTTACTGTGTTTACAGAGCAGGCAGCACATCCCTGGTGCTGTGGCTTCTCTCCCATAGGCAGCAAAGAGCAATGGGATAGCAGAGGGGATGGGACAAACTCTTCCAACAGCTTGGGTGAACAAATCTGTTATCCAGGACAGGAGGTTGTTATGGACTCTGAGCCCAGATCCCAATGTGCATGCAAGGCAAAAGAAAACGTTTGCACTAAGGTCAAGCACTGTGAGAAAAGAGATGCAGCACTCGTGCAACCATCTCAGGACCACCATCAGCCTCaggaagctgcagcagcagctttgGATTTTCCACCCGAAGAACCTCATTATGGGGAGGAGGAGTTAGGCAAGCCTGGAGACGGCCAGAGGGAAGAGAGGCATAGTTTTAATTCTTTACAAACCACAGGGGTGCAGGAGGATGGAGTGTCAGACGAAGATGGAGAAGATCGGgcaaagagcacttctactgtACCCCAAACATTTAGCGTGTATGAGTCTGCTTCAGAGGACCTGGCGTCCTTCTCTGATGATTTGTCATTTGAGGGTCCTTCTGCGGACTTGGAACCAAATGTTTCATCTCTTGTTTCACCAGAGGATCAGACTGACTGGGACcagactgatgatgatgatgaggaagaAGAACTGGGAAATTACACTGACAGCATGGCAAATCTCAGACAGTCTAAGGCAGAGGAGGGTTTTCATTATTGCAACCCATCTGCGACTCAGGAACCTTCTGCTACCTCCAACCAGTCACAACCTGGAACACATACAGAAGACGAATTTGCAGACTTTGTAGACTGTAGTTTTCAGCATCACAGGGACCAAGGGCGTGTGCAAAGTGCAGACGCAGTGGTGCAGAGTCTAGGAAAGCTCCCACCGAGTGACAGCTTTGCTGATTTCTGCTCAGCGCCCACACTGGAGGATGGAGAGGGGTCGTGGGCGGAGTTCAAGGACCAGAGGGCTCAGGAGGAGGGAAAAACTTGGACGCAGTTCAGAGAGccagtcagcagcctgcagaCTGATGGGGACACTGAGGAGGAGCAGGACAGGGCAGGGCAATATGGGGTTTCCAGGAGGAACAGCTGTCAGGTGTCTCTGTCCTGCCGTGTCCAGCAGCTTCTCCTGGCCAGTTTTCCAGAGGTAGAGGTCCCAGCGGTGGAAGGTGGGGAGGAGGGGCTCAGCCTCGGTGCTCTGCTTCACGCCGGACACCTCCCTgagagtgaggaagaggaggaggaggaggaggaggaggaggagataccCGAACTCTGTCCCAGATCTCAGTGGATTCGGCGCAGGGTGTGGTGGCCAGACCAGGACCTCCACGATGCAGTCGGCCTCCAGTTTCAGTGGGGAGGTTCCCACGCAAATAGGACTCTGCTCAGGTGCCTTGGTGTGGAGACGAGGAACGTTGTGTTCATTGGCATGAAGAAGCAGCCAGTGGCTGTGCCTGCTTTTGCATCCAGCCTGGGAATGCTAGAGCCCACCAAAGACTCTGTGCCAGCTGTCTGTTCTCCAGGACACACAGCAGTCACAACACTAGCACCTCCAGGGCCCCGGCACACACCGGACCCCTCAACAGATTCAATGCCGGAGGCGCTCCCTTCCAGCCATCTGGACTGGAGCAGCCGTGGCCTTAGCAGCTCTCAGGACGGCTGCTCTTCATTCAACCTGGATTATTTTGGTCCTGAGGAGGAGGAGCGCAGATCctactgcagcagcagcagcagccgtagCAACAGTCCTCCTGCAGGAGTTGACCGTGAGCTGTACGAGTTGACCATCAGCAAACTGGAAACCGCCGCTAGAAGTAGCCACATGGAAGACACCTTGAATCGCCTTATGTCCACTGCAGAGAAAACCAGCACTTCAGTCCGGAAACCTCAGCAGAATGAGGAGCTGAGTGCAGAGGCTGGCAGGCTGATCTCTGGACTGCCTAACCTGTCCTTCATGCAGGCCAAGGTCCTCATGTTCCCAAGCATCCTCCTACCCAAAACCTGCTGTTCTCCATAACAGTGACGTGTGATCTCCACACACGTTCAACCCTAACGTACTGTACGGCTCAAATGTGACCTGTTTTGACATTTGACAGCAGTAAAAACATCTTAAATACTATTCTTTTAGCCtaaacttttatgacttttcccAAAGTgcacaaaaatgaaaatattgaaAACTGTTACACTTGTATACAGGTGTTACAAATACTATAAAagtagattataaaaaaatagaCTATAAAGCTACCTGAGCTGCCATTTCAGTGACTGAGGTAgtaggaagtattcagatctagggctgcacgatatgaggaaaatatctaattgcgattattttgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261457 lncRNA upstream 12551 8857991 ~ 8904877 (+) True G192530
TU261455 lncRNA upstream 12551 8879158 ~ 8904877 (+) False G192530
TU261368 lncRNA upstream 539729 8369378 ~ 8377699 (+) True G192464
TU261307 lncRNA upstream 788065 8126718 ~ 8129363 (+) True LOC120548141
XR_005637142.1 lncRNA downstream 49715 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA downstream 49715 8977204 ~ 9058418 (+) False LOC120548135
XR_005637144.1 lncRNA downstream 49715 8977204 ~ 9058418 (+) False LOC120548135
TU261508 lncRNA downstream 262529 9190018 ~ 9195416 (+) False meis1b
TU261618 lncRNA downstream 470059 9397548 ~ 9419324 (+) True G192633
XM_039783727.1 mRNA upstream 1732 8893346 ~ 8915696 (+) True LOC120547907
XM_039783725.1 mRNA upstream 5096 8909665 ~ 8912332 (+) True LOC120547906
XM_039783726.1 mRNA upstream 18126 8893366 ~ 8899302 (+) False LOC120547907
XM_039783416.1 mRNA upstream 121836 8750738 ~ 8795592 (+) False ugp2b
XM_039783415.1 mRNA upstream 121836 8751425 ~ 8795592 (+) True ugp2b
XM_039784166.1 mRNA downstream 3058 8930547 ~ 8948105 (+) True LOC120548133
XM_039784170.1 mRNA downstream 187167 9114656 ~ 9194392 (+) True meis1b
XM_039784595.1 mRNA downstream 399885 9327374 ~ 9333998 (+) True LOC120548362
XM_039783259.1 mRNA downstream 493855 9421344 ~ 9437910 (+) True LOC120547702
XM_039783260.1 mRNA downstream 494610 9422099 ~ 9437910 (+) False LOC120547702
unassigned_transcript_1115 other upstream 966240 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 2112876 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 2411609 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 2416333 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 2556437 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 679036 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 1387457 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 1514038 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 1659289 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 1659333 10586822 ~ 10591159 (+) False mrpl57

Expression Profile