RNA id: XR_005637161.1


Basic Information

Item Value
RNA id XR_005637161.1
length 2160
RNA type transcript
GC content 0.52
exon number 16
gene id sdccag8
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11717893 ~ 11790539 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTATTCACGGTACACGCATCGGGGCGGTCCTATAGGTTACGATTGTAGGAGACACTCACCTCGGGGCACGCCGGTGTTTCAAAACAAACGCAACATCGTTGAGAATCGATTACCGTTACTACGTGCGAGATATGATTGTTGCTGTACTGTAGCTAGTTGTTGTACATAGCCTAGCCATGAGCCTAGCATATTTAGTTAGTAGCTAATACTGCATAGCGTGATTTAACTTCAGTTATTCATCAATGAAACCGTTGGACTCAGATGAGGAGGAAGCGGAACAGCTGGGTGCTTACCAAAAGGAGCTGAGACAGCGGGCCAACCAGAGCATACAGCAACTGAGCAGTGCTCTGGAACAGCAGAGCTCTGATGAAGAAGAGGTGGAAGAGCCCAGAGGCAGTGGTGGCAGCCTCTTCACCGCCCTGGTCGAAGAGGACAACGCTGCATGGAGTCAAAAGACACAGAGTGAAGCAGTTAATCAGCTGAAGAGCCTTCTACTGAAACAGTGCAGAGAaattccttctcctctctctccttcaaaGAAAAAGTCTCCAGCCAAGAGAGTACAGCAGGAGGAAAGGTCCAACTTGCCTACCTATCAAGATTTGGTCCCAATGATTCACAACCAGTCAGAGTACATTCAACACCTGGAAGCTGAGGTCAAATTGTGCAAGGAGGAGCTGCAGGGGATGAAACAGCGGATcagagtggtggtggtggagaatGAGAAGCTGCATTCAGACCTCAAATCCAAAGCTGTAGATGAATCTCTGAAAGACTACACGTTTCGAAACTCCAcgGTGAATGAGAGTATGGCAGCCAACAGCCACAGCATGCTGCAGAGAGAAGAACACACCACATGGAAAAATGAGCTGGAACAATTGAAAGTGATCTACCAGGCCCAGATTCAAAGCTTGGAGGCTCAGGTCATTTCCCTCAGGAAAGATCTGTCGGTCAGTCAGAAGGAGTGTGAGGAGGTGAAGGTTCGTCTGAGACACCGGGAGAAACAGGCTGCAGATGCACTGAGTGCTGATGGAGCTCCCCGTGTGGCAGGATTGTGTCTGAAGTGTGCACAGCACGAGGCTGTGTTGGCGGGGACTCACACAAATCTTCATGTCCAGGCTATTGACAGGCTCACAAAggagcGTGATGAGTTACTAGTGGCTCTGCGTGCTGTGCGGGCTAGTCAGCAGGAGGCACAACAGAGGGAGTGGTCATCTTGTCTCCAAGTCAAACAGGCTGTAGAGATGGTGGAAGAAGCGAATCTGGACAAAGCTAGGATAGAGGTACAGTGTGAGCAGCTGTCCAGGGAGCTGGCTCGACAGAGGGAACAACTAGAACGAGAAGCACAGGGCTTGCAGGAGAGACTGTCTGAGGCCAGAGAGGAGGGCCGGGCTGAGGCCCGCAAACAGAGGGAGGAGCTGGCACATACAgtGTCCAGCCTCTCCCAACATGTTGCTGAGTTGGAAGGACAGCTAGACAGAACTCACAGAGACAAGAgctcactgaccaatcagctggAAGATGCTCTTCGCAAACTTGCCAGTCAGGAACAAGACAATACCAAGGTGGGTTTGGATCTGCGATATCAGCTCAGTCAGGCCCAACTGAAGaaagaggaggcagagagagagctcCGAGAGCTCAACACCAAGACCAGCAGACAGATGGAAAAAGCTGCACAGgaagtggaaAGGCTGAACTCAGAGCTGGTTGGCTGTCGGCAGCATCTGGAGGCGGTCCAAAAGGACGGGAGCCAATGGCAGGCCGAAGCCCTGAGCCTAGCAGAACAGCTGGCAAATGCCCAGCGCCAACTGCACCTCACCAGCTCCCGGCTTgatctgtgtttaagtgtgtttgtctgtcagctGGCCAGCGCTGACACACTGGCCGCATGGGGGGcagttgtgtgtttaagggATGAGacaggacagagagagtTCGGAACAGGCTCATGAGGAGGAAATGGCGTCTATGACCCTTTCAGCgcgggaaagagagagagagctggctGTGCTGTTGGAGCAAACAGAGGCTCAACACCAGCAGAGAGTTGGAGAGTTGGACAGTCTGCTGAGTTCCCAGAATTCCCTGATCAGGAAGCTCAAGGACGAGTGCTGCACGCTGGGAGTCAAACTAGAGGAGCTGACAGAAAACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262300 lncRNA upstream 2043 11715216 ~ 11715850 (+) True G193161
TU262190 lncRNA upstream 134104 11582793 ~ 11583789 (+) False rtkn2a
TU262157 lncRNA upstream 298791 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 331568 11383093 ~ 11386325 (+) True G193041
TU262094 lncRNA upstream 567685 11146804 ~ 11150208 (+) True G192995
TU262324 lncRNA downstream 39711 11786413 ~ 11791957 (+) True G193172
TU262313 lncRNA downstream 118723 11865425 ~ 11891203 (+) False zbtb18
TU262376 lncRNA downstream 240572 11987274 ~ 11991708 (+) False G193213
TU262377 lncRNA downstream 240572 11987274 ~ 11991708 (+) False G193213
TU262378 lncRNA downstream 240572 11987274 ~ 11991708 (+) False G193213
XM_039784364.1 mRNA upstream 7487 11697606 ~ 11710406 (+) True tnfaip3
XM_039784095.1 mRNA upstream 24653 11681816 ~ 11693240 (+) True LOC120548093
XM_039783016.1 mRNA upstream 38782 11669373 ~ 11679111 (+) True LOC120547549
XM_039784192.1 mRNA upstream 133721 11574398 ~ 11584172 (+) True rtkn2a
XM_039784193.1 mRNA upstream 188666 11527317 ~ 11529227 (+) True hint1
XM_039784034.1 mRNA downstream 110285 11856987 ~ 11867686 (+) False zbtb18
XM_039784035.1 mRNA downstream 110285 11856987 ~ 11867686 (+) False zbtb18
XM_039784039.1 mRNA downstream 110285 11856987 ~ 11867686 (+) False zbtb18
XM_039784031.1 mRNA downstream 110805 11857507 ~ 11867686 (+) True zbtb18
XM_039784041.1 mRNA downstream 113082 11859784 ~ 11867686 (+) False zbtb18
TU262145 other upstream 349270 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 352289 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 565652 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 761315 10953139 ~ 10956578 (+) False LOC120548129
TU261925 other upstream 1126734 10586822 ~ 10591159 (+) False mrpl57
XR_005637197.1 other downstream 500249 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 500249 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 540344 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 540344 12287046 ~ 12290232 (+) False sf3b5
TU262526 other downstream 540344 12287046 ~ 12290232 (+) False sf3b5

Expression Profile