RNA id: XM_039784458.1


Basic Information

Item Value
RNA id XM_039784458.1
length 690
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC120548310
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2829059 ~ 2829748 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaagagagagacagagagagagagagagaagagagagagagagagagagagagacagagagagacagagagagagaacgagagagagagacgagagagagacgagagagagacaagagagagagagagagagaacgagagagagaggagagagacgagagagagacgagagagagagagagagagagagagagacagaaagagagagacagagagagagagagagacgagagagagagaacgagagagagagagagagagagacagagagacagagagagaacgagagagagagagagagagacgagagagagacagagagagacagagagagagaacgagagagagagagagagaacgagagagagagaacgagagagagagagagaacaagagagagaacgagagagagagaacgagagagagaacgagagagagagacgagagagagagcgagagagagagaacgagagagagagaacgagagagagacgagagagagagacaaagagagagagagagagaacgagagagagagagagagagagagagagaacgagagagagagaacgagagagagagacaagagagagagaacgagagagagagagaacgagagaagagagagagaacgagagagagagacgagagagagagaacgagagagagacgagagagagagacgagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260175 lncRNA upstream 4678 2823297 ~ 2824381 (+) False G191571
TU260168 lncRNA upstream 4678 2823567 ~ 2824381 (+) False G191571
TU260155 lncRNA upstream 89006 2738144 ~ 2740053 (+) True G191560
TU260149 lncRNA upstream 103534 2716036 ~ 2725525 (+) False G191556
TU260148 lncRNA upstream 105953 2716036 ~ 2723106 (+) True G191556
TU260180 lncRNA downstream 2973 2832721 ~ 2921724 (+) False G191571
TU260206 lncRNA downstream 5886 2835634 ~ 2895066 (+) True G191582
TU260207 lncRNA downstream 12444 2842192 ~ 2843011 (+) True G191583
TU260212 lncRNA downstream 53235 2882983 ~ 2883352 (+) True G191588
TU260182 lncRNA downstream 90670 2920418 ~ 2921724 (+) False G191571
XM_039784452.1 mRNA upstream 165381 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 191783 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 320678 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 628602 2193300 ~ 2200457 (+) True LOC120548117
XM_039783718.1 mRNA upstream 717188 2006144 ~ 2111871 (+) False LOC120547899
XM_039784697.1 mRNA downstream 264219 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 294019 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 294019 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 294019 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 343857 3173605 ~ 3176172 (+) True adob
TU260196 other upstream 50692 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 62997 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 67380 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 512824 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 707594 2121392 ~ 2121465 (+) True trnat-agu_15
TU260292 other downstream 264236 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 320066 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 320725 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1442225 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1458149 4287897 ~ 4288644 (+) True G191903

Expression Profile