RNA id: XM_039784534.1


Basic Information

Item Value
RNA id XM_039784534.1
length 2196
RNA type mRNA
GC content 0.48
exon number 2
gene id ppp1r3ca
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3589225 ~ 3591796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCAGAGTGCTGAGCAACCCTCGTCACTGTAAGGCAGCaagagcaagagagaggaggaagaaaaggatGAGTGAGGACAGCATGAACTTTtagaaaagatagaaatcaAAAGGACTGACAACTGTTAAAAAGCTCTTCTCTCCTTggagctgttttttttcctttattccaTGAGTGCTACAAGTGTGCTCAGGTCTTTCAGTCCGTCAGCAATGCCTGGCCCAGTCATGCCGATGGACGTGGCTATGAGATTCTACATCAGCCACTCTCCGCCTCCTCTCCGGGGTTTCCTCAGCTCCTACGACGAGCTGCAGAGGACCCAGAAGAACCAGGCCAGCCAGTCGACCAGGCGCAGCCACAACCAGCAGCTCTACAAACCCCTGCGGCCCTGCCTCAGCAACCAGCAGAGAGCAGTGGACGATGGCGACTGCACGGACTGGAACAACAGCAAGGCCAGCAAAAAGAAGGTGGTGTTCGCCGACACGAGGGGCATGTCGCTCACCGCCATCCACGTCTTCTCCAAGTTCGACGATGAGCCGTATCAAAACAAGCGTTGCAGTGGAATCAGCGAGGAACTGCAGTTTGACATGTCAGACCTGGAAACGGCCACGATGGACCTGAAGATCAGCTCGGTGCGCAACCTGGCGCTGGACTTTAAACAGCCTTCGGCCGACTACCTGGACTTCCGGAACCGCCTGATTCAGAACTCTGTCTGCTTGGAGAACTGCTCGCTGCAGGAGCGCTCCCTAACCGGCACCATCAAGGTCCGGAACATGGGGTTTGAGAAGTCGGTGCAGTTGCGTGCCACCTTCGACTCGTGGGCAAGCTTCAGCGACTTCGAGTGCACCTTCATGAACAACGTCTACAGCTGCCAGGATACCGACACCTTTGCGTTCGTCGTGGATCTACCCGCCTACATCCCCCCACAGAACAGTGTCGAGTTCTGCATCTGCTTCAAAGCCCAGGGCCAGACCTTCTGGGACAATAACGACGGCAAGAACTACGTTCTCAAGCACATCGGCTGGAACGGAGAGGACCTGAACATTCGGATGTCCCCGACTTCCGTTGAGCAGAAAAAGCCTTCAGAGCACAAAAACGGGGGCGTGAAGGTGCTGGAGATGGAGTTTGATCAGTTCGGCAGCCCACGCATGTCCAGCGGACTCTTTCCTGGCTGGCAGAGCTGGGGTCAGATTGATAACGCCGTGCCTTATTGGTGAACACATCAGGATGTTTGCTGAAAATGACATTGGACTAAGATAACAGACACTGACAGGGCATTCAGTGCAAATCCAGCTGCGGGTTTGAACTTAGACTGGCTCTCAGCCACAAAATGAAATTAAGCAAACAACCTTTGCTTTTTTGTATTAGCAGAGAAAGTGTACAAACCTAGACCTAATGGTCTGGGGTTGGAGGATGAGGGATAAATGGGAAAAATCTATCTTGTTTCACATATTCCTCTCATGTAAAATATTAATGTGCCTTCTCTGAGTGCCTGCCCACTAAAATACAGACAAGTTGTACAGCACACAACAAATGCTGAGCCCCTTTTAAGGGCCTGACGTATTGGTTAAATATGCACTGATTGAGATGTCTCTCTCAATGTGATGTCTGTAAACATAAAAACGAAGTGGAAAGTGGAGCTGATTAAGTCCTTCATATTGAAGGGAACGTACTGGGGAGTGCATGGCGACAAAATGCTTCTCTACTAAAGGAAACACAGCTGATTaatttctgaaatgcaaaatgcaCACTAAACCTTTGCACCTTCAAATGAGAAAGTAATTTAACATTGTTAAAAGTGGCCTTTAAGTCATGCAGCCcattctttctttccctctgtgAAAATTGCACGTCTGATGAAAGATGTTTGAATGATGTAATATTAAGGTGACTTTGTTGAGGAATTTAGCTGCTGACAACAGACGTGTCTCAAGAGAGACTGCACGTGATTGGTTGTCTCGAACAAGGAAGACGTTTGGTAATTCCGGTGGCTACCGTATGTCGAGAAAGGTGTTTTTATTGTGTGatgagtgtacagtatgtgtggctGGAAGGGAGATTTTTCTTTGTTGaagaaaatcaattttttttctcactgtgAAAGAGAAGCTTGTGCTCCAGCATTGCATTTCACATGAAGATGTGGGCCATGTATTTCCCTTTCAGAAATAAATGTCTATATTTGTGCTAAAATA

Function

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260320 lncRNA upstream 155621 3433346 ~ 3433604 (+) True G191656
TU260318 lncRNA upstream 191498 3397395 ~ 3397727 (+) True G191654
TU260255 lncRNA upstream 250151 3328596 ~ 3339074 (+) False LOC120547552
TU260314 lncRNA upstream 275008 3309048 ~ 3314217 (+) True G191650
TU260243 lncRNA upstream 331146 3211461 ~ 3258079 (+) True LOC120547552
TU260526 lncRNA downstream 31554 3623350 ~ 3624702 (+) True G191785
TU260528 lncRNA downstream 34859 3626655 ~ 3626919 (+) True G191787
TU260530 lncRNA downstream 46383 3638179 ~ 3640170 (+) True G191789
TU260531 lncRNA downstream 48822 3640618 ~ 3643020 (+) True G191790
TU260534 lncRNA downstream 110796 3702592 ~ 3730541 (+) True G191793
XM_039782933.1 mRNA upstream 27805 3548104 ~ 3561420 (+) True fgfbp3
XM_039784703.1 mRNA upstream 54997 3532714 ~ 3534228 (+) True LOC120548444
XM_039784798.1 mRNA upstream 96852 3480321 ~ 3492373 (+) True LOC120548518
XM_039784107.1 mRNA upstream 207134 3347038 ~ 3382091 (+) True LOC120548100
XM_039784106.1 mRNA upstream 207134 3347038 ~ 3382091 (+) False LOC120548100
XM_039782936.1 mRNA downstream 221611 3813407 ~ 3827078 (+) True LOC120547503
XM_039784225.1 mRNA downstream 240790 3832586 ~ 3845675 (+) True LOC120548162
XM_039784706.1 mRNA downstream 415930 4007726 ~ 4064499 (+) True LOC120548448
XM_039783761.1 mRNA downstream 658809 4250605 ~ 4344168 (+) True arfgef3
XM_039783152.1 mRNA downstream 758808 4350604 ~ 4352975 (+) True LOC120547632
unassigned_transcript_1109 other upstream 438681 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 439339 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 493803 3093984 ~ 3095422 (+) False LOC120548437
TU260181 other upstream 667501 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 810858 2775308 ~ 2778367 (+) True G191573
TU260665 other downstream 680177 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 696101 4287897 ~ 4288644 (+) True G191903
TU260824 other downstream 1294580 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 2428326 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 2428326 6020122 ~ 6396805 (+) False si:dkey-22n8.3

Expression Profile