RNA id: TU313012



Basic Information


Item Value
RNA id TU313012
length 698
RNA type TUCP
GC content 0.44
exon number 1
gene id G230842
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27603005 ~ 27603702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cagacagctagcagatagtgaggagatgtttttttacagtgtgttcagaggacagacagctagcagatagtgaggagatgttttttacagtgtgttcagaggacagacagctagcagatagtgaggagatgttttttacagtgtgttcaggggacaggcagctagcagatagtgaggagatgttttttacagtgtgttcaggggacagacagctagcagatagtgaggagatgttttttacagtgtgttcaggggacagacagctagcagatagtgaggagatgttttttacagtgtgttcaggggacagacagctagcagatagtgaggagatgttttttacagtgtgttcagaggacagacagctagcagatagtgaggagatgttttttacagtgtgttcagaggacagacagctagcagatagtgaggagatgttttttacagtgtgttcagaggacagacagctagcagatagtgaggagatgttttttacagtgtgttcaggggacagacagctagcagatagtgaggagatgttttttacagtgtgttcagaggacagacagctagcagatagtgaggagatgttttttacagtgtgttcaggggacaggcagctagcagatagtgaggagatgttttttacagtgtgttcaggggacagacagctagcagatagtgaggagatgttttta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312956 lncRNA upstream 62759 27501846 ~ 27540246 (+) True G230791
TU312954 lncRNA upstream 105404 27497235 ~ 27497601 (+) True G230790
TU312953 lncRNA upstream 106311 27496196 ~ 27496694 (+) True G230789
TU312952 lncRNA upstream 109213 27493559 ~ 27493792 (+) True G230788
TU312951 lncRNA upstream 116918 27485713 ~ 27486087 (+) True G230787
TU313013 lncRNA downstream 3309 27607011 ~ 27607559 (+) True G230843
TU313014 lncRNA downstream 6705 27610407 ~ 27611003 (+) True G230844
TU313030 lncRNA downstream 25249 27628951 ~ 27631043 (+) True G230858
TU313044 lncRNA downstream 52318 27656020 ~ 27738199 (+) True G230866
XR_005638074.1 lncRNA downstream 95361 27699063 ~ 27701973 (+) False LOC120552997
XM_039792459.1 mRNA upstream 330790 27253416 ~ 27272215 (+) True LOC120553763
XM_039792036.1 mRNA upstream 371614 27224262 ~ 27231391 (+) True LOC120553521
XM_039791351.1 mRNA upstream 456214 27138046 ~ 27146791 (+) True gpr22a
XM_039791354.1 mRNA upstream 531021 27069077 ~ 27071984 (+) False LOC120553194
XM_039791352.1 mRNA upstream 531021 27069077 ~ 27071984 (+) True LOC120553194
XM_039791029.1 mRNA downstream 33386 27637088 ~ 27644879 (+) False golt1ba
XM_039791030.1 mRNA downstream 33437 27637139 ~ 27644879 (+) False golt1ba
XM_039791028.1 mRNA downstream 33474 27637176 ~ 27644879 (+) True golt1ba
XM_039791031.1 mRNA downstream 33474 27637176 ~ 27642836 (+) False golt1ba
XM_039791032.1 mRNA downstream 44301 27648003 ~ 27651082 (+) True spx
XR_005638128.1 other upstream 530453 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1221896 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1221896 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 1556324 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 2824747 24620812 ~ 24778258 (+) True G230148
TU313087 other downstream 337619 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 454029 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 867104 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 867404 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 897532 28501234 ~ 28501419 (+) True LOC120553833

Expression Profile