RNA id: TU313083


Basic Information

Item Value
RNA id TU313083
length 3186
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G230900
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27968060 ~ 27971245 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttcttttaacaacttttcatctttaacgtcttaagatggcacagaccgagtttgaagttgatcggatgaaatctctaggaggagttcgttaaagtacgacatgtggaaatggccaaaatcgcactaatttcaactttgaaatcaaaatggcggacttcctgttgggtttagggtattgctctaatgaagttttgtgtacgtcttgacatgttacatatgtgtaccaagtttcgtgagtctacgttaaacgcactggaggggctcaattttcttaactttgtagggggcgctagcgagccatttttgtgcgcctattcccgaaacccttaaaatacgtaaatattcaccagacttgatgcggccgccaaatttggtgagtttttgaatatattaagcccctcaaaaagccaattcatttaaCGGGAAagtaatagaagaaagaaagaaagaataataattccttcagtttcaatagggcctttgccgctgtcagcgctcgggccctaataatattTCTCCAAAGTTGACAGGTAGGCTATgtaaattaattcatttcacAATTTCACCTTTCTACATCAAATCCGTTTACCTTTGCAAGCATCGTCCTCCCTTGGGGAAACCCATCGATATATGGGGGAAACCAACCAAACTAAACGGGAATGAGGGAGGAATGAATAACACTTGCATTTGATGCTTTCGTTTTACTATCAGTAGCCGAtatcccatggatgtattaacgATATCCCTGCTTGACATTAGAGGAAGGGACCCGACGGTGTGATTGGTCgaactcttcttctttagtttttttttccagcatgctcGTGGCTGCTACGCTGTTTTAGCCATAAGTTTTAGCTGCCTACTATCATCAAGAGATAGACTGAGACGGCTACTGCACGTCAACGAGTGAACCCAAAGCAGTCACCTGATTTTCGCgtagtttaaagtgacaaatcgtatcaccgtattttgatgtcaaaatgcgTATCTACTAcacaggttggcaggtctgcatAGTGCAGTTGAGTAGCTAAATGCTGCCTATGTCAACAGTCATGAAAGCCTGTGATCTTGCGGAGCTATGTATCTGGCTGATAGTCACCTTTTATCGGTaaaatgtaacaacaacaaccgcTAAAAGACTGCGACCTTGAGGAGCTCTGTACATGGCTGACAGCCACCCTTTCTCGGCTAAATGTTACTGTAACAACCGCTAAAACTACTTCTAAAAGCAGCTTGATACActgtacattacacattatggttGCATGTCAGTTTGTAACAAAGTGGGAATCATCTTACTGTTCAACATATCATAACCTTGAAGCTGAAGCTAGTAACATTAGCCACAAGAATATTCCATAACGTAACATACCATACATTGCAGAGCGACCTGTAGAGAACGTTAACATTGTCCCAATTCAACAATTCAGGCTACACGTTGTTTTGCTGAAGTTAAATTGGATGTTTCCATTATGAGGAAGTCAAACTCGCAGTTTCTGTCATATGTCTGTCACGGTGGTTGTTaccagccatggcccgcttgcccgATCctctggtaacgttagcagttagcatgtGTTAGCATGGCAGCGTTAGCCATCACAAGTTGGGTTCACTTCACTGACTGTGTCTTAATATTTTTTGCGAGTAAATATCTTGAGTACACTATGTAATTTAATGccagtacacaaatgttgaaatgactgaaaatgcccatccctaccACTAACattagccgtgataaattaccGTAAAGCtcaatgcttacctgttcaggattAAATTAGCCAACTCAGTGTCCTTTTGGGCTCAAAAGCTGGCCCGTGTTTTACCACATCTCTGGTCATGCAACTGCTAGAAAGATGCAGTTTTTTTAGTTCAGGTAGAATAAATCTATCTCTGTTAATCCAGTTGTCAGAATGGAAATTTCAatggagaaaatactggctttagcaCTGTAGTCAgagaagatagtatttcaacttagcatgttttcttaatatctgatgacatattgtggtcagtttttatttaaagtgctcatattatgctcattttcaggttcataattgtatttagaggttgtaccagaataggtttacatggtttaattttcaaaaaacacaattttttgttgtactgcacattgctgcagctcctcttttcaccatgTGTTGAGCTGTCTGTTTTagttacagagtgagacatctcacttctgttcctatctttgttgggagtcgcacatgcgcagtagctaggtaagcactgctagcttgtcagttgcagagcatgaggtcgtgccacgctagcagctaggcgagcattataacgtgtgttacaaagtgacgcacattcgTCACggaaggctggactacaattgagctgtttggagcagtttgtgaacactCTTTTCTCTgaaagatggtaagtccctttggggtggactgtgggcttttttactttgtaaacctataacatgcacaaaaagatatataacacaataaaggaaagtgaAAAGGCcagaaagcataatatgagcactttaaaacagtAAATGTATTACATATTGCTCCCGTAAGTGATCATTGCTCAAAATGTGTCATATATTGCCAAACTTTGCATCAATTGAGTTAAAATATGTATCATTTGTAGATGGAATTTTGTTCACTAGTGCCAAAGTACCTTAAAATGCAAAATCCAAGTCAAAGTAAATGGTGGTTCTCCTCGGCAAGCCAGTATGGACAACAGTACGGAGTGACAATGTAAATCCTGGTTTCTGTTGCAGATATACGAAAACCTATATCACACATAACACATTTGACAAAAAACCAAGCCCCAAAACACATTGTAACCTTGCTCAGCAGTACAGAATGTATATAACAGTGTCTAGACACACCTGCTTAGGTAGAGAAAGTGTCTTTGTGGCTCCACCCCCTGCATTAAAAATCAAGATCTGTCTGTCTAGCTAAAACTCCAATCTCCTGTCACTGTATCAACTTATCACACAACACTATTGATTCAcagttttatttaattgtaatcAAACCTTACTTGGTCATGCTGAGAGTTAGCTGAGCTAATGCCCTGCTGTTCAAACATCCAGACTGTTAAATGTCATACCACTAAATGTGACCGATGCCTGTTTGCTTTTTGACCACTTTATATGCACGTGTACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313061 lncRNA upstream 168028 27779356 ~ 27800032 (+) False G230881
TU313060 lncRNA upstream 168028 27798431 ~ 27800032 (+) True G230881
TU313057 lncRNA upstream 188982 27762876 ~ 27779078 (+) True G230879
TU313056 lncRNA upstream 207945 27759598 ~ 27760115 (+) True G230878
TU313044 lncRNA upstream 229861 27656020 ~ 27738199 (+) True G230866
TU313090 lncRNA downstream 690 27971935 ~ 27973192 (+) True G230907
TU313084 lncRNA downstream 2056 27973301 ~ 27974585 (+) True G230901
TU313091 lncRNA downstream 3606 27974851 ~ 27976209 (+) True G230908
TU313085 lncRNA downstream 5209 27976454 ~ 27976871 (+) True G230902
TU313138 lncRNA downstream 15894 27987139 ~ 27987461 (+) True G230948
XM_039791439.1 mRNA upstream 8662 27849737 ~ 27959398 (+) True LOC120553234
XM_039791441.1 mRNA upstream 8662 27866663 ~ 27959398 (+) False LOC120553234
XM_039791440.1 mRNA upstream 8662 27913712 ~ 27959398 (+) False LOC120553234
XM_039791033.1 mRNA upstream 271343 27695624 ~ 27696717 (+) True kiss2
XM_039791032.1 mRNA upstream 316978 27648003 ~ 27651082 (+) True spx
XM_039791037.1 mRNA downstream 45598 28016843 ~ 28023618 (+) True LOC120552999
XM_039792180.1 mRNA downstream 178487 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA downstream 178488 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA downstream 178488 28149733 ~ 28293546 (+) False LOC120553593
XM_039792477.1 mRNA downstream 646010 28617255 ~ 28630012 (+) True LOC120553776
TU313087 other upstream 20587 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 364358 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 895508 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1586951 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1586951 26372736 ~ 26381109 (+) False mrps33
TU313169 other downstream 86486 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 499561 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 499861 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 529989 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 609242 28580487 ~ 28580602 (+) True LOC120553840

Expression Profile