RNA id: TU313216



Basic Information


Item Value
RNA id TU313216
length 415
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G231021
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28351029 ~ 28351443 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCATTTTGATTACAAACCTCTGTCTGTATCATAGAAGATCTTAGAATAGAAGTATAGAAGTGTTTGTTTACCTCACACTGTAGACCAAATCATCTTTGATGGGAAAAAGTtctgttgtctctttttctgtctgtgcCATCAACACTTCTTTCTTCACCAACCCCAAGATAAAAGAGGTATTTACTGACTGCAAATTCTAGACGGGCGAAGCAAAGTGACTGTGACTACAGGAAGCGTGACCGCCTGTCCAAGGTCTGCACACAGGAGAAAAATGAACACCCCTCTTCTCCAAACATACACAGAAATCTTACCGGCATGTTGTCACTGTACTGTGATGATGACAgcaataaaaaccacaacctACTATAGCTGTTTTTAAACAAGATATATAGTTAGAGCAAAGCGATGGCGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313215 lncRNA upstream 7058 28343768 ~ 28343971 (+) True G231020
TU313214 lncRNA upstream 13031 28336981 ~ 28337998 (+) True G231019
TU313212 lncRNA upstream 47189 28303467 ~ 28303840 (+) True G231017
TU313185 lncRNA upstream 235593 28115187 ~ 28115436 (+) True G230991
TU313183 lncRNA upstream 245782 28105041 ~ 28105247 (+) True G230989
TU313217 lncRNA downstream 2650 28354093 ~ 28354305 (+) True G231022
TU313218 lncRNA downstream 3571 28355014 ~ 28355368 (+) True G231023
TU313224 lncRNA downstream 29878 28381321 ~ 28381567 (+) True G231029
TU313226 lncRNA downstream 45469 28396912 ~ 28397114 (+) True G231031
TU313228 lncRNA downstream 64448 28415891 ~ 28452795 (+) True G231033
XM_039792180.1 mRNA upstream 57483 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 57483 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 57483 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 327411 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 391631 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 265812 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 739514 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 739539 29090982 ~ 29099400 (+) False LOC120553059
TU313169 other upstream 292811 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 403556 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 747327 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 1278477 27069077 ~ 27072552 (+) False LOC120553194
TU312732 other upstream 1969920 26372736 ~ 26381109 (+) False mrps33
unassigned_transcript_1530 other downstream 119363 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 119663 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 149791 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 229044 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 261112 28612555 ~ 28620865 (+) False LOC120553776

Expression Profile