RNA id: TU313401


Basic Information

Item Value
RNA id TU313401
length 491
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G231166
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28975036 ~ 28975830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGGCGATCGGGCACGGGAACAGCTCATCTCACTCCTCCGCCGCACTGAAGCAGCTGCGACCGCTGGATTGCCAGTATTCCAAGGCCTCACAGAGGAAACTGATGAGGACGGAGATGAAGCTGATGCATTTCCCATGATTCAAGTCCCTACACAAGGAGGGGGAATAGGCCTGGTGTATAGGGCCTGGACTGAATTAGACATTAGACAAACACCAAGCAGTATAAAGGCGAGACGGTGGAGGACTTCCAGCACCGGCTTTCTGAGACTTTTGATAGACACAGCGGCATCGCTCGCACCACTGCCGCCGGAGCAGTGGTTGAACTTTGGGAagctcatttcaaaaacgtgttTTTGAGTGGGCTGCTCCCTGACATACGAGCTGAAGTGGACAAAACCTGCATTGGACTCCCCGATTCAGCCCTGATGGAGATTGTTAGACATGCTAGACATGCTGAGAAAATCCTGACCAGCACAAGAGACAAGACGGAc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638111.1 lncRNA upstream 97936 28876463 ~ 28877100 (+) True LOC120553132
TU313354 lncRNA upstream 182291 28791960 ~ 28792745 (+) True G231135
TU313351 lncRNA upstream 203467 28770614 ~ 28771569 (+) True G231132
TU313348 lncRNA upstream 207406 28767321 ~ 28767630 (+) True G231129
TU313344 lncRNA upstream 228909 28745902 ~ 28746127 (+) True G231125
XR_005638195.1 lncRNA downstream 53147 29028977 ~ 29031361 (+) True LOC120553663
TU313443 lncRNA downstream 92500 29068330 ~ 29070464 (+) True G231199
TU313447 lncRNA downstream 100284 29076114 ~ 29076444 (+) True G231203
XM_039792477.1 mRNA upstream 345024 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 681490 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 681490 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 681490 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 951418 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 115127 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 115152 29090982 ~ 29099400 (+) False LOC120553059
unassigned_transcript_1548 other upstream 115972 28858994 ~ 28859064 (+) True trnag-gcc_23
unassigned_transcript_1547 other upstream 116313 28858653 ~ 28858723 (+) True trnag-gcc_22
unassigned_transcript_1546 other upstream 116997 28857969 ~ 28858039 (+) True trnag-gcc_21
unassigned_transcript_1545 other upstream 118357 28856609 ~ 28856679 (+) True trnag-acc_1
unassigned_transcript_1544 other upstream 118698 28856268 ~ 28856338 (+) True trnac-gca_37
TU313385 other downstream 10492 28986322 ~ 28992193 (+) True G231160
XR_005638231.1 other downstream 80305 29056135 ~ 29056327 (+) True LOC120553830
XR_005638243.1 other downstream 80899 29056729 ~ 29056839 (+) True LOC120553845
XR_005638229.1 other downstream 81279 29057109 ~ 29057291 (+) True LOC120553828
XR_005638222.1 other downstream 82268 29058098 ~ 29058294 (+) True LOC120553821

Expression Profile