RNA id: XM_039791031.1


Basic Information

Item Value
RNA id XM_039791031.1
length 538
RNA type mRNA
GC content 0.47
exon number 5
gene id golt1ba
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27637088 ~ 27644879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCGGAAGACGTGGCTGTTGCTCTGTTGCTGCAGTTAGCAGCTGTCATCCAAATTATTGTTAGAGAAGTACTTGAATGCTACTttaatattttctctttttctattttatctTCACCCGTTTATTCGGCGTCAAGATGATTTCGCTCACGGACTCCCAAAAGATTGGAATGGGATTAACAGGCTTCGGCgtgtttttcctcttcttcgGGATGATCCTGTTCTTTGACAAAGCACTCCTGGCTATTGGAAATATCCTGTTTGTTGCTGGACTTGCTTTTGTCATCGGGCTGGAAAGGACCTTCCGCTTCTTCTTCCAGAAGCACAAGATGAAGGCCACCAGTTTCTTCCTGGGAGGTGTGTTTGTGGTGCTGATTGGCTGGCCCATCGTCGGAGTCGTGCTGGAGTTCTACGGCTTTTTCCTCCTGTTTAGGGGTTTCTTCCCAGTTGTCGTGGGCTTTATCAGAAGAATACCAGTCCTCGGCTCCATCCTGAACCTGCCCTTCATCAGTGCAccTTCGTAAGGCTCTGAGGACAAT

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313030 lncRNA upstream 6133 27628951 ~ 27631043 (+) True G230858
TU313014 lncRNA upstream 26173 27610407 ~ 27611003 (+) True G230844
TU313013 lncRNA upstream 29617 27607011 ~ 27607559 (+) True G230843
TU312956 lncRNA upstream 96930 27501846 ~ 27540246 (+) True G230791
TU312954 lncRNA upstream 139575 27497235 ~ 27497601 (+) True G230790
TU313044 lncRNA downstream 13184 27656020 ~ 27738199 (+) True G230866
XR_005638074.1 lncRNA downstream 56227 27699063 ~ 27701973 (+) False LOC120552997
TU313052 lncRNA downstream 56484 27699320 ~ 27702637 (+) True LOC120552997
TU313056 lncRNA downstream 116762 27759598 ~ 27760115 (+) True G230878
TU313057 lncRNA downstream 120040 27762876 ~ 27779078 (+) True G230879
XM_039792459.1 mRNA upstream 364961 27253416 ~ 27272215 (+) True LOC120553763
XM_039792036.1 mRNA upstream 405785 27224262 ~ 27231391 (+) True LOC120553521
XM_039791351.1 mRNA upstream 490385 27138046 ~ 27146791 (+) True gpr22a
XM_039791354.1 mRNA upstream 565192 27069077 ~ 27071984 (+) False LOC120553194
XM_039791032.1 mRNA downstream 5167 27648003 ~ 27651082 (+) True spx
XM_039791033.1 mRNA downstream 52788 27695624 ~ 27696717 (+) True kiss2
XM_039791439.1 mRNA downstream 206901 27849737 ~ 27959398 (+) True LOC120553234
XM_039791441.1 mRNA downstream 223827 27866663 ~ 27959398 (+) False LOC120553234
XM_039791440.1 mRNA downstream 270876 27913712 ~ 27959398 (+) False LOC120553234
TU313012 other upstream 33474 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 564624 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1256067 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1256067 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 1590495 26038287 ~ 26046681 (+) False arhgef39
TU313087 other downstream 298485 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 414895 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 827970 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 828270 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 858398 28501234 ~ 28501419 (+) True LOC120553833

Expression Profile