RNA id: XM_039791352.1


Basic Information

Item Value
RNA id XM_039791352.1
length 2783
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120553194
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27069077 ~ 27072552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttgataatCCACTCACGGCGCTAAAGATAGGCGGCAGGATTATTTTCACGTGAGCCACGGGGCTTTCGAacagccgggcaggaagtggaacagcgagagcatccagtcaatttaTCAAAAGACACCCCCCACAACATCGTATACGTATGTCTCCTATACAACACCACGGACaacgagagattcatcttggagtacttgtagagacaatatcTGGGAGTTGGCCAGCAAGACACTCCGCTACTGAGACGCTCCtggtgtggtatggcgcgtggCGGGGGACGGATCAAAACCACAGCGCAGCCGGAACGCAGCTCAGACGCGCCTGGTGGAAAATCCGGGTAAGAGTGAACTTATCTTGTGTCACTGTGGTCAAAGTGATGAAGTAGTGTTAAGGAATTATGATTCCTCGAGTTTTATTAAttatcatttgttcattttccATAAACACTGTGTTCCAAATGGTCTCACACTGTTGTCTGAGCTGTGATATGGAGATGCACTCATCCCGGACTCAGCTATCCAGCTAGCAGGCTACACAGCACAGCGCCAGGACAGGACGAGTAACTCCGgtaagagcagaggaggaggactgtgtgtgtatgtcaacAACCTGTAGTGTACTAACACAGTGACTTTGGACCGTCACTGCTCCCGGGACCTGGAGTACGTGACTATCAAATGTCGTCCCATTTATCTCCCGAGAGAGTTTACCGTTGTCCTGATCACCGTTGTGTACATTCCGCCggatgctaacgctaacgtaaCTCTCGGACTTTTAAATGTTAGCATTAGCAGTCAACAGAGCAGGTATCCTGAGGCAGTGTTTATCGTTGCGGGGGACTTCAACCACGCAGACTTAAAAGCAGTGATCCCAAAATTCCATCAGCACGTAAAGTGTACAACCAGAGGAGCTAACACACTGGACAAGGTCTACTCAAACATCAAGCGGGGCTACAGGGTTAGCCCTTTACCACATCTGGCCCAGTCTGACCACCTGTCACTGCTTTCAGTCCTGGCATACACACCCCGCAGGAAAACCGCTCCTACCAtcacaaaaactgttaaaacatGGCCTGATGGAGCCTCTCAGGAGCTGCAAGACTGCTTTGACAGGACCTGTTGGGACATTTTTGAACATCCAGATCTGAATATGTTTACAGACAGTGTTCTGTGTTATATTAAAAACTGCATAGACACTGTCACAgtagacaaacacatacaggtCTACCCCAACCAGAAGCCCTGGATGTCAAAGGAggtccagcagttgttaaaggCGAGGAACAATGCCTTCAGATCAAGGGACGGGGCTCTCTACAGCGCAGCACGTACCAATCTGAAGCGGGGCATCCGAAAGGCCAAGTCAGACTACAACAACACCTTCGTCAAATTCACTGATGACACCACGGTGGTGGGGCTCATCTCGAAGGGGGATGAGTCCAACTATAGAGACGAGGTGGAGCAATTGGCAGGGTGGTGCAGAGCTAACAACTTGCTCCTCAATACATCAAAGACAAAGGAGCTAATCGTGGACTTCAGGAGGAAGAAAACGGACATCCAGCCACTGCTCATAGGTGGGACCTGTGTTGAGAGGGTCTCTGACTTCCGCTTCCTGGGAGTCAACATCATGGAGGACCTGATCTGGGACGCCCACACCACGGAGCTAGTAAAAAAGGCCCAGCAGAGACTTTACTTCCTGAGAGTCCTAAGGAGGAACAACATCCCCCAAAAACAGCTGGTGTCCTTCTATCGCTGCTCAATTGAGAGCATCATGTCatactgtctctgtgtgtgtggttttcaaGCTGCACTGTGGCACAGAGAAAAAAGCTCCAGGGGGTCATAAAGGCAGCACAGAAAACCATTGGctgccctctcccctccctggAAGAACTTCACAGCTCCTGCTGCCTCAAAAAGGCCAAAACCATCCTACAGGACTCATCACACCCCGGTCACACACTGTTCGAACTACTGCCGTCAGGCAGGAGATACAGGTCCATGAAATCAAGAACAAACAGACTACAAAACAGCTTTTATCCAACAGCTGTAAGTGCATTGAATAATGCTGCTAAAGTATAGTTCCTACCACTAATCTACCTCAATAGGGCTATGtgcaattttttaaatgtggatgCCTGTATGAGTTtgtctcccatgtgtttttaGCATTAGTATAATAGGTTTGCAGTAgtagctttttttttactatgtatttattatttattatggtATATATTACCCCATAGATGTTTGGCACTGACAAGGACTGCACTGAATTCCGTTGTATCtgttacaatgacaataaagatattctattctattcagcCAGAGGCCCATCTAGAGGTTTTGTTTACTGTGACAGGAGTAGGTACATTCCTGTAGCTATCGGCTGGGGACTTTTTATTGAAATCTGTCTGTCAACTGTgtacacatatactgtatgacaGCCTGTCACTGGTGAAGAAGACAGTATCTCTGAATGACCGAAGGAAAAGCTATATATAGAGTATGAAATTGTATGGAGACATGCAAAAGCTTGTCATTGGTTATTGAGCAGGGTTATTGTAAAGAAATCTTTTCATTGgtttaaaaacatattcattTGGCTGCTTTCCAATGAGCATAGACTTCCTGTTTTGTGACAAGTATGAAATCATTATGTATCTCTGTGTTCTTTGGAAGATGCTGAGGAAAACTGATCAGGTGAGACCTTGTTACTTTTCCTCGGTAACTTctctgtgattaattacataaaacatttgcaatatTCACCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312799 lncRNA upstream 97224 26963162 ~ 26971853 (+) False LOC120553759
TU312811 lncRNA upstream 188090 26880507 ~ 26880987 (+) True G230658
TU312795 lncRNA upstream 387979 26680864 ~ 26681098 (+) True G230645
TU312785 lncRNA upstream 454905 26613952 ~ 26614172 (+) True G230635
TU312750 lncRNA upstream 636955 26428434 ~ 26432122 (+) True G230600
TU312841 lncRNA downstream 43942 27115926 ~ 27116894 (+) True G230685
TU312905 lncRNA downstream 160410 27232394 ~ 27233038 (+) True G230746
TU312936 lncRNA downstream 210515 27282499 ~ 27282919 (+) True G230773
TU312937 lncRNA downstream 210969 27282953 ~ 27283275 (+) True G230774
TU312947 lncRNA downstream 399104 27471088 ~ 27472678 (+) True G230783
XM_039791355.1 mRNA upstream 17795 27046066 ~ 27051282 (+) True ndufa5
XM_039792298.1 mRNA upstream 24660 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA upstream 24660 27019372 ~ 27044417 (+) False aebp2
XM_039792455.1 mRNA upstream 100145 26693356 ~ 26968932 (+) True LOC120553759
XM_039792277.1 mRNA upstream 642033 26386818 ~ 26427044 (+) False braf
XM_039791351.1 mRNA downstream 66062 27138046 ~ 27146791 (+) True gpr22a
XM_039792036.1 mRNA downstream 152278 27224262 ~ 27231391 (+) True LOC120553521
XM_039792459.1 mRNA downstream 181432 27253416 ~ 27272215 (+) True LOC120553763
XM_039791029.1 mRNA downstream 565104 27637088 ~ 27644879 (+) False golt1ba
XM_039791030.1 mRNA downstream 565155 27637139 ~ 27644879 (+) False golt1ba
TU312731 other upstream 687968 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 687968 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 1022396 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 2290819 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2756139 24309936 ~ 24312938 (+) False LOC120553083
TU313012 other downstream 531021 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 869337 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 985747 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 1398822 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 1399122 28471106 ~ 28471178 (+) True trnak-uuu_24

Expression Profile