RNA id: XM_039791355.1


Basic Information

Item Value
RNA id XM_039791355.1
length 525
RNA type mRNA
GC content 0.51
exon number 5
gene id ndufa5
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27046066 ~ 27051282 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgttatatactgtctatggttaaaaCCAAAGCCAAACAGTTGACGTCATATTAAGTGGCCGGAAATCGTTCTGTCCGCAGAAAAGAATGGCTGGACTGCTGAAGAAGACGACCGGCCTGGTCGGCCTGGCGGTGTCCCACAATCCCCACGAGCGTCTGAGGATTCTGTACTCCAAGATCCTGGCGTCGCTGCAGACCATGCCGCAGGACGCCGCCTACAGGAAGTACACAGAGCAGCTGGTCAGCGAGAGGTTCCAACACGTCAAAATGgAGCCTGATGTCGAGAAGCTGGAGAAGAAGATCAACTGTGGCCAGATTGAAGAAGTTATTTTCCAGgcGGAGTGTGAGCTGGCTCTGTCCAGGAAGATGACAGAGTGGAAACCATGGGAACCCCTGATAGAAGAGCCTCCTCCCAACCAATGGAAATGGCCCATCTGAACCAACCCGTGTATATACTGCTCATGtcatactgtctgtgtgtgagatcCCTACTGTacaaataaaagtcctgcaaACATTTCCCCA

Function

GO:

id name namespace
GO:0022904 respiratory electron transport chain biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K03949 NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312799 lncRNA upstream 74213 26963162 ~ 26971853 (+) False LOC120553759
TU312811 lncRNA upstream 165079 26880507 ~ 26880987 (+) True G230658
TU312795 lncRNA upstream 364968 26680864 ~ 26681098 (+) True G230645
TU312785 lncRNA upstream 431894 26613952 ~ 26614172 (+) True G230635
TU312750 lncRNA upstream 613944 26428434 ~ 26432122 (+) True G230600
TU312841 lncRNA downstream 64644 27115926 ~ 27116894 (+) True G230685
TU312905 lncRNA downstream 181112 27232394 ~ 27233038 (+) True G230746
TU312936 lncRNA downstream 231217 27282499 ~ 27282919 (+) True G230773
TU312937 lncRNA downstream 231671 27282953 ~ 27283275 (+) True G230774
TU312947 lncRNA downstream 419806 27471088 ~ 27472678 (+) True G230783
XM_039792298.1 mRNA upstream 1649 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA upstream 1649 27019372 ~ 27044417 (+) False aebp2
XM_039792455.1 mRNA upstream 77134 26693356 ~ 26968932 (+) True LOC120553759
XM_039792278.1 mRNA upstream 619022 26386815 ~ 26427044 (+) True braf
XM_039792277.1 mRNA upstream 619022 26386818 ~ 26427044 (+) False braf
XM_039791354.1 mRNA downstream 17795 27069077 ~ 27071984 (+) False LOC120553194
XM_039791352.1 mRNA downstream 17795 27069077 ~ 27071984 (+) True LOC120553194
XM_039791351.1 mRNA downstream 86764 27138046 ~ 27146791 (+) True gpr22a
XM_039792036.1 mRNA downstream 172980 27224262 ~ 27231391 (+) True LOC120553521
XM_039792459.1 mRNA downstream 202134 27253416 ~ 27272215 (+) True LOC120553763
TU312731 other upstream 664957 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 664957 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 999385 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 2267808 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2733128 24309936 ~ 24312938 (+) False LOC120553083
XR_005638128.1 other downstream 17795 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 551723 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 890039 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1006449 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 1419524 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile