RNA id: XR_005638111.1


Basic Information

Item Value
RNA id XR_005638111.1
length 197
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120553132
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28876463 ~ 28877100 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCACAACCTAGACTGGAGCAAGATGTTTCAGAGTGgtGTACTTGTGGAAATTGCTCGACAATGTCCACTGAAGTTGAAAACATCTGTTGCCAAGAAATACAAATggtTGTTACACAAATGCAACAGGTTCCTGTCCCACCTACCTGCATGGTTTACCATCCAGACCTAGAGCCAACCTGTTTGAACCACTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313354 lncRNA upstream 83718 28791960 ~ 28792745 (+) True G231135
TU313351 lncRNA upstream 104894 28770614 ~ 28771569 (+) True G231132
TU313348 lncRNA upstream 108833 28767321 ~ 28767630 (+) True G231129
TU313344 lncRNA upstream 130336 28745902 ~ 28746127 (+) True G231125
TU313341 lncRNA upstream 132125 28744071 ~ 28744338 (+) True G231122
TU313401 lncRNA downstream 97936 28975036 ~ 28975830 (+) True G231166
XR_005638195.1 lncRNA downstream 151877 29028977 ~ 29031361 (+) True LOC120553663
TU313443 lncRNA downstream 191230 29068330 ~ 29070464 (+) True G231199
TU313447 lncRNA downstream 199014 29076114 ~ 29076444 (+) True G231203
XM_039792477.1 mRNA upstream 246451 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 582917 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 582917 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 582917 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 852845 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 213857 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 213882 29090982 ~ 29099400 (+) False LOC120553059
unassigned_transcript_1548 other upstream 17399 28858994 ~ 28859064 (+) True trnag-gcc_23
unassigned_transcript_1547 other upstream 17740 28858653 ~ 28858723 (+) True trnag-gcc_22
unassigned_transcript_1546 other upstream 18424 28857969 ~ 28858039 (+) True trnag-gcc_21
unassigned_transcript_1545 other upstream 19784 28856609 ~ 28856679 (+) True trnag-acc_1
unassigned_transcript_1544 other upstream 20125 28856268 ~ 28856338 (+) True trnac-gca_37
TU313385 other downstream 109222 28986322 ~ 28992193 (+) True G231160
XR_005638231.1 other downstream 179035 29056135 ~ 29056327 (+) True LOC120553830
XR_005638243.1 other downstream 179629 29056729 ~ 29056839 (+) True LOC120553845
XR_005638229.1 other downstream 180009 29057109 ~ 29057291 (+) True LOC120553828
XR_005638222.1 other downstream 180998 29058098 ~ 29058294 (+) True LOC120553821