RNA id: XR_005638222.1


Basic Information

Item Value
RNA id XR_005638222.1
length 197
RNA type snRNA
GC content 0.47
exon number 1
gene id LOC120553821
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 29058098 ~ 29058294 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCTTCCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATcagtttaatatctgatatGTCCTCTATCAGGGGACAACATATTAAATGGTTTTTGCCAATGGGAGGGTTGAAAAGGGGGGCTTGCTCCATTCACTCCAACGTATCGACCACGGTATTGCAGCAGCGCCGCCCGGAACGGTGCACCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638195.1 lncRNA upstream 26737 29028977 ~ 29031361 (+) True LOC120553663
TU313401 lncRNA upstream 82268 28975036 ~ 28975830 (+) True G231166
XR_005638111.1 lncRNA upstream 180998 28876463 ~ 28877100 (+) True LOC120553132
TU313354 lncRNA upstream 265353 28791960 ~ 28792745 (+) True G231135
TU313351 lncRNA upstream 286529 28770614 ~ 28771569 (+) True G231132
TU313443 lncRNA downstream 10036 29068330 ~ 29070464 (+) True G231199
TU313447 lncRNA downstream 17820 29076114 ~ 29076444 (+) True G231203
XM_039792477.1 mRNA upstream 428086 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 764552 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 764552 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 764552 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 1034480 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 32663 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 32688 29090982 ~ 29099400 (+) False LOC120553059
XR_005638229.1 other upstream 807 29057109 ~ 29057291 (+) True LOC120553828
XR_005638243.1 other upstream 1259 29056729 ~ 29056839 (+) True LOC120553845
XR_005638231.1 other upstream 1771 29056135 ~ 29056327 (+) True LOC120553830
TU313385 other upstream 65905 28986322 ~ 28992193 (+) True G231160
unassigned_transcript_1548 other upstream 199034 28858994 ~ 28859064 (+) True trnag-gcc_23
XR_005638245.1 other downstream 406 29058700 ~ 29058815 (+) True LOC120553848
XR_005638230.1 other downstream 805 29059099 ~ 29059288 (+) True LOC120553829
XR_005638244.1 other downstream 1410 29059704 ~ 29059817 (+) True LOC120553846
XR_005638225.1 other downstream 1802 29060096 ~ 29060282 (+) True LOC120553824
XR_005638235.1 other downstream 2394 29060688 ~ 29060799 (+) True LOC120553837