RNA id: XR_005638226.1


Basic Information

Item Value
RNA id XR_005638226.1
length 186
RNA type snRNA
GC content 0.46
exon number 1
gene id LOC120553825
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 29064058 ~ 29064243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGCCCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATcagtttaatatctgatatGTCCTCTATCAGGGGACAACATATTAAAATGGATTTTGCCAATGGGAGTTGAAAAGGGGGCTTGCTCCATTCACTCCACGACGTATCTCGGTATTGCAGCGCGCGCGAACGGTGCACCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638195.1 lncRNA upstream 32697 29028977 ~ 29031361 (+) True LOC120553663
TU313401 lncRNA upstream 88228 28975036 ~ 28975830 (+) True G231166
XR_005638111.1 lncRNA upstream 186958 28876463 ~ 28877100 (+) True LOC120553132
TU313354 lncRNA upstream 271313 28791960 ~ 28792745 (+) True G231135
TU313351 lncRNA upstream 292489 28770614 ~ 28771569 (+) True G231132
TU313443 lncRNA downstream 4087 29068330 ~ 29070464 (+) True G231199
TU313447 lncRNA downstream 11871 29076114 ~ 29076444 (+) True G231203
XM_039792477.1 mRNA upstream 434046 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 770512 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 770512 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 770512 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 1040440 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 26714 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 26739 29090982 ~ 29099400 (+) False LOC120553059
XR_005638242.1 other upstream 285 29063655 ~ 29063773 (+) True LOC120553844
XR_005638220.1 other upstream 812 29063063 ~ 29063246 (+) True LOC120553819
XR_005638237.1 other upstream 1281 29062661 ~ 29062777 (+) True LOC120553839
XR_005638224.1 other upstream 1806 29062070 ~ 29062252 (+) True LOC120553823
XR_005638239.1 other upstream 2271 29061670 ~ 29061787 (+) True LOC120553841
XR_005638240.1 other downstream 411 29064654 ~ 29064768 (+) True LOC120553842
XR_005638223.1 other downstream 808 29065051 ~ 29065246 (+) True LOC120553822
XR_005638236.1 other downstream 1410 29065653 ~ 29065768 (+) True LOC120553838