RNA id: unassigned_transcript_1530


Basic Information

Item Value
RNA id unassigned_transcript_1530
length 73
RNA type tRNA
GC content 0.45
exon number 1
gene id trnat-ugu_41
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28470806 ~ 28470878 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctggatagctcagttggtagagcatcAGACTTGTAATCTGATGGTACAATGTTCAAGTCCCTGTTCAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313228 lncRNA upstream 18011 28415891 ~ 28452795 (+) True G231033
TU313226 lncRNA upstream 73692 28396912 ~ 28397114 (+) True G231031
TU313224 lncRNA upstream 89239 28381321 ~ 28381567 (+) True G231029
TU313218 lncRNA upstream 115438 28355014 ~ 28355368 (+) True G231023
TU313217 lncRNA upstream 116501 28354093 ~ 28354305 (+) True G231022
TU313267 lncRNA downstream 7657 28478535 ~ 28543954 (+) True G231067
TU313300 lncRNA downstream 114864 28585742 ~ 28585943 (+) True G231094
XR_005638181.1 lncRNA downstream 137005 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA downstream 137008 28607886 ~ 28616103 (+) False LOC120553529
TU313341 lncRNA downstream 273193 28744071 ~ 28744338 (+) True G231122
XM_039792180.1 mRNA upstream 177260 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 177260 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 177260 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 447188 28016843 ~ 28023618 (+) True LOC120552999
XM_039791439.1 mRNA upstream 511408 27849737 ~ 27959398 (+) True LOC120553234
XM_039792477.1 mRNA downstream 146377 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 620079 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 620104 29090982 ~ 29099400 (+) False LOC120553059
TU313169 other upstream 412588 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 523333 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 867104 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 1398254 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 2089697 26372736 ~ 26381109 (+) True mrps33
unassigned_transcript_1531 other downstream 228 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 30356 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 109609 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 141677 28612555 ~ 28620865 (+) False LOC120553776
TU313332 other downstream 174158 28645036 ~ 28645537 (+) True G231113