RNA id: unassigned_transcript_1542


Basic Information

Item Value
RNA id unassigned_transcript_1542
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_19
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28853539 ~ 28853609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGACCCGGGTCCGATTCCCGGCCAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313354 lncRNA upstream 60794 28791960 ~ 28792745 (+) True G231135
TU313351 lncRNA upstream 81970 28770614 ~ 28771569 (+) True G231132
TU313348 lncRNA upstream 85909 28767321 ~ 28767630 (+) True G231129
TU313344 lncRNA upstream 107412 28745902 ~ 28746127 (+) True G231125
TU313341 lncRNA upstream 109201 28744071 ~ 28744338 (+) True G231122
XR_005638111.1 lncRNA downstream 22854 28876463 ~ 28877100 (+) True LOC120553132
TU313401 lncRNA downstream 121427 28975036 ~ 28975830 (+) True G231166
XR_005638195.1 lncRNA downstream 175368 29028977 ~ 29031361 (+) True LOC120553663
TU313443 lncRNA downstream 214721 29068330 ~ 29070464 (+) True G231199
TU313447 lncRNA downstream 222505 29076114 ~ 29076444 (+) True G231203
XM_039792477.1 mRNA upstream 223527 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 559993 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 559993 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 559993 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 829921 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 237348 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 237373 29090982 ~ 29099400 (+) False LOC120553059
unassigned_transcript_1541 other upstream 271 28853198 ~ 28853268 (+) True trnac-gca_36
unassigned_transcript_1540 other upstream 952 28852517 ~ 28852587 (+) True trnag-gcc_18
unassigned_transcript_1539 other upstream 2314 28851155 ~ 28851225 (+) True trnag-gcc_17
unassigned_transcript_1538 other upstream 3000 28850469 ~ 28850539 (+) True trnag-acc
unassigned_transcript_1537 other upstream 3341 28850128 ~ 28850198 (+) True trnac-gca_35
unassigned_transcript_1543 other downstream 1978 28855587 ~ 28855657 (+) True trnag-gcc_20
unassigned_transcript_1544 other downstream 2659 28856268 ~ 28856338 (+) True trnac-gca_37
unassigned_transcript_1545 other downstream 3000 28856609 ~ 28856679 (+) True trnag-acc_1
unassigned_transcript_1546 other downstream 4360 28857969 ~ 28858039 (+) True trnag-gcc_21
unassigned_transcript_1547 other downstream 5044 28858653 ~ 28858723 (+) True trnag-gcc_22